SMTL ID : 8tq8.1 (1 other biounit)

Crystal structure of Fab.34.5.8 in complex with MHC-I (H2-Dd)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: C.120 No protein-ligand interaction detected (PLIP) GOL.2: 1 residues within 4Å: Chain A: W.273 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.273 GOL.4: 2 residues within 4Å: Chain D: E.10, K.19 No protein-ligand interaction detected (PLIP)

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain B: S.11, H.13, P.14, P.15, W.95 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.11, B:W.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boyd, L.F. et al., Experimental Structures of Antibody/MHC-I Complexes Reveal Details of Epitopes Overlooked by Computational Prediction. J Immunol. (2024)

Release Date

2024-03-20

Peptides

H-2 class I histocompatibility antigen, D-D alpha chain: A
Beta-2-microglobulin: B
Transmembrane protein gp41: C
Fab.34.5.8 Heavy chain: D
Fab.34.5.8 Light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
P

D
H

E
L

H-2 class I histocompatibility antigen, D-D alpha chain

Beta-2-microglobulin

Transmembrane protein gp41

Fab.34.5.8 Heavy chain

Fab.34.5.8 Light chain

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