SMTL ID : 1qo3.2 (1 other biounit)

Complex between NK cell receptor Ly49A and its MHC class I ligand H-2Dd

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-oligomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain C: W.167, R.170 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.170 Water bridges: C:E.166, C:E.166 EDO.2: 8 residues within 4Å: Chain C: W.114, F.116, W.133, W.147, A.152, D.156 Chain E: R.5, V.8 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:R.5, E:V.8, C:D.156 EDO.3: 6 residues within 4Å: Chain C: H.188, T.190, W.204 Chain D: H.14, P.15, P.16 1 PLIP interactions: 1 interactions with chain C Water bridges: C:Q.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tormo, J. et al., Crystal Structure of a Lectin-Like Natural Killer Cell Receptor Bound to its Mhc Class I Ligand. Nature (1999)

Release Date

2000-01-02

Peptides

LY49A: AB
MHC CLASS I H-2DD HEAVY CHAIN: C
BETA-2-MICROGLOBULIN: D
HIV ENVELOPE GLYCOPROTEIN 120 PEPTIDE: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
A

D
B

E
P

LY49A

MHC CLASS I H-2DD HEAVY CHAIN

BETA-2-MICROGLOBULIN

HIV ENVELOPE GLYCOPROTEIN 120 PEPTIDE

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