SMTL ID : 8trv.1 (1 other biounit)

Structure of the EphA2 LBDCRD bound to FabS1C_C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 2 residues within 4Å: Chain A: R.71, S.147 Ligand excluded by PLIP IOD.8: 4 residues within 4Å: Chain C: S.28, R.66, G.68, T.69 Ligand excluded by PLIP

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: Q.184, M.223 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain B: A.160, T.162, S.163 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: H.166 Chain C: D.170 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: Q.37, K.45 Ligand excluded by PLIP

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: E.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.144 NA.4: 1 residues within 4Å: Chain A: D.121 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.121 NA.7: 7 residues within 4Å: Chain B: K.145, Q.173, S.179 Chain C: S.134, Q.163, T.181, T.183 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:S.134, C:Q.163, B:K.145, B:S.179, B:S.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, J.J. et al., Synthetic Antibodies targeting EPHA2 Induce Diverse Signaling-Competent Clusters with Differential Activation. To be Published

Release Date

2024-07-17

Peptides

Ephrin type-A receptor 2: A
S1C variant of Fab_C1 heavy chain: B
S1C variant of Fab_C1 light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
G

Ephrin type-A receptor 2

S1C variant of Fab_C1 heavy chain

S1C variant of Fab_C1 light chain

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