SMTL ID : 8trv.2 (1 other biounit)

Structure of the EphA2 LBDCRD bound to FabS1C_C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: N.157, A.160, L.161, Q.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.157

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.2: 2 residues within 4Å: Chain A: K.212, E.214 Ligand excluded by PLIP IOD.4: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP IOD.8: 1 residues within 4Å: Chain C: W.231 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: N.201, N.206, T.207 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.201

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain B: Q.37, K.45 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: R.61 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: S.205 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain C: K.260, F.261, E.262, L.269 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain C: L.183, Q.184, G.185, L.186, D.249 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: G.96 Chain C: E.273, H.274 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, J.J. et al., Synthetic Antibodies targeting EPHA2 Induce Diverse Signaling-Competent Clusters with Differential Activation. To be Published

Release Date

2024-07-17

Peptides

S1C variant of Fab_C1 heavy chain: A
S1C variant of Fab_C1 light chain: B
Ephrin type-A receptor 2: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
B

S1C variant of Fab_C1 heavy chain

S1C variant of Fab_C1 light chain

Ephrin type-A receptor 2

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