SMTL ID : 8tv5.1

Structure of the EphA2 LBDCRD bound to FabS1CE_L1 in a 2:1 (EphA2 to Fab) ratio

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.60 Å

Oligo State

hetero-1-1-2-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain C: D.121 Chain D: D.126, E.144 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain D Metal complexes: C:D.121, D:E.144 MG.2: 5 residues within 4Å: Chain C: A.124, D.126, E.144 Chain D: D.121, T.122 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Metal complexes: D:D.121, D:D.121, C:E.144, C:E.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bruce, H.A. et al., Synthetic antibodies targeting EphA2 induce diverse signaling-competent clusters with differential activation. Protein Sci. (2025)

Release Date

2024-09-11

Peptides

S1CE variant of Fab_L1 heavy chain: A
S1CE variant of Fab_L1 light chain: B
Ephrin type-A receptor 2: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

D
C

S1CE variant of Fab_L1 heavy chain

S1CE variant of Fab_L1 light chain

Ephrin type-A receptor 2

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