- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-4-4-mer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
ZN.1: 4 residues within 4Å:- Chain A: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.4888, A:C.4891, A:H.4908, A:H.4913
ZN.9: 4 residues within 4Å:- Chain G: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:C.4888, G:C.4891, G:H.4908, G:H.4913
ZN.13: 4 residues within 4Å:- Chain H: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.4888, H:C.4891, H:H.4908, H:H.4913
ZN.17: 4 residues within 4Å:- Chain I: C.4888, C.4891, H.4908, H.4913
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:C.4888, I:C.4891, I:H.4908, I:H.4913
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 14 residues within 4Å:- Chain A: K.4166, K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:R.4170, A:E.4885, A:F.4889, A:I.4890, A:T.4909, A:H.4913, A:L.4915
- Salt bridges: A:K.4166, A:K.4169, A:K.4169, A:K.4169
ATP.4: 4 residues within 4Å:- Chain A: E.928, W.1007, R.1011, R.1031
4 PLIP interactions:4 interactions with chain A- Salt bridges: A:R.1011, A:R.1011, A:R.1011, A:R.1031
ATP.10: 14 residues within 4Å:- Chain G: K.4166, K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:R.4170, G:E.4885, G:F.4889, G:I.4890, G:T.4909, G:H.4913, G:L.4915
- Salt bridges: G:K.4166, G:K.4169, G:K.4169, G:K.4169
ATP.12: 4 residues within 4Å:- Chain G: E.928, W.1007, R.1011, R.1031
4 PLIP interactions:4 interactions with chain G- Salt bridges: G:R.1011, G:R.1011, G:R.1011, G:R.1031
ATP.14: 14 residues within 4Å:- Chain H: K.4166, K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:R.4170, H:E.4885, H:F.4889, H:I.4890, H:T.4909, H:H.4913, H:L.4915
- Salt bridges: H:K.4166, H:K.4169, H:K.4169, H:K.4169
ATP.16: 4 residues within 4Å:- Chain H: E.928, W.1007, R.1011, R.1031
4 PLIP interactions:4 interactions with chain H- Salt bridges: H:R.1011, H:R.1011, H:R.1011, H:R.1031
ATP.18: 14 residues within 4Å:- Chain I: K.4166, K.4169, R.4170, M.4884, E.4885, K.4887, C.4888, F.4889, I.4890, F.4905, T.4909, H.4913, N.4914, L.4915
11 PLIP interactions:11 interactions with chain I- Hydrogen bonds: I:R.4170, I:E.4885, I:F.4889, I:I.4890, I:T.4909, I:H.4913, I:L.4915
- Salt bridges: I:K.4166, I:K.4169, I:K.4169, I:K.4169
ATP.20: 4 residues within 4Å:- Chain I: E.928, W.1007, R.1011, R.1031
4 PLIP interactions:4 interactions with chain I- Salt bridges: I:R.1011, I:R.1011, I:R.1011, I:R.1031
- 20 x CA: CALCIUM ION(Non-covalent)
CA.3: 3 residues within 4Å:- Chain A: E.3922, Q.3925, T.4931
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:E.3922
CA.5: 6 residues within 4Å:- Chain F: D.21, D.23, D.25, T.27, I.28, E.32
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.21, F:D.21, F:D.23, F:D.25, F:E.32
CA.6: 7 residues within 4Å:- Chain F: D.57, D.59, N.61, T.63, I.64, D.65, E.68
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:D.57, F:T.63, F:E.68
CA.7: 6 residues within 4Å:- Chain F: D.94, D.96, N.98, Y.100, I.101, Q.136
3 PLIP interactions:3 interactions with chain F- Metal complexes: F:D.94, F:D.94, F:Y.100
CA.8: 5 residues within 4Å:- Chain F: D.130, D.132, G.133, D.134, E.141
2 PLIP interactions:2 interactions with chain F- Metal complexes: F:D.130, F:D.134
CA.11: 3 residues within 4Å:- Chain G: E.3922, Q.3925, T.4931
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:E.3922
CA.15: 3 residues within 4Å:- Chain H: E.3922, Q.3925, T.4931
1 PLIP interactions:1 interactions with chain H- Metal complexes: H:E.3922
CA.19: 3 residues within 4Å:- Chain I: E.3922, Q.3925, T.4931
1 PLIP interactions:1 interactions with chain I- Metal complexes: I:E.3922
CA.21: 6 residues within 4Å:- Chain J: D.21, D.23, D.25, T.27, I.28, E.32
5 PLIP interactions:5 interactions with chain J- Metal complexes: J:D.21, J:D.21, J:D.23, J:D.25, J:E.32
CA.22: 7 residues within 4Å:- Chain J: D.57, D.59, N.61, T.63, I.64, D.65, E.68
3 PLIP interactions:3 interactions with chain J- Metal complexes: J:D.57, J:T.63, J:E.68
CA.23: 6 residues within 4Å:- Chain J: D.94, D.96, N.98, Y.100, I.101, Q.136
3 PLIP interactions:3 interactions with chain J- Metal complexes: J:D.94, J:D.94, J:Y.100
CA.24: 5 residues within 4Å:- Chain J: D.130, D.132, G.133, D.134, E.141
2 PLIP interactions:2 interactions with chain J- Metal complexes: J:D.130, J:D.134
CA.25: 6 residues within 4Å:- Chain K: D.21, D.23, D.25, T.27, I.28, E.32
5 PLIP interactions:5 interactions with chain K- Metal complexes: K:D.21, K:D.21, K:D.23, K:D.25, K:E.32
CA.26: 7 residues within 4Å:- Chain K: D.57, D.59, N.61, T.63, I.64, D.65, E.68
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:D.57, K:T.63, K:E.68
CA.27: 6 residues within 4Å:- Chain K: D.94, D.96, N.98, Y.100, I.101, Q.136
3 PLIP interactions:3 interactions with chain K- Metal complexes: K:D.94, K:D.94, K:Y.100
CA.28: 5 residues within 4Å:- Chain K: D.130, D.132, G.133, D.134, E.141
2 PLIP interactions:2 interactions with chain K- Metal complexes: K:D.130, K:D.134
CA.29: 6 residues within 4Å:- Chain L: D.21, D.23, D.25, T.27, I.28, E.32
5 PLIP interactions:5 interactions with chain L- Metal complexes: L:D.21, L:D.21, L:D.23, L:D.25, L:E.32
CA.30: 7 residues within 4Å:- Chain L: D.57, D.59, N.61, T.63, I.64, D.65, E.68
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:D.57, L:T.63, L:E.68
CA.31: 6 residues within 4Å:- Chain L: D.94, D.96, N.98, Y.100, I.101, Q.136
3 PLIP interactions:3 interactions with chain L- Metal complexes: L:D.94, L:D.94, L:Y.100
CA.32: 5 residues within 4Å:- Chain L: D.130, D.132, G.133, D.134, E.141
2 PLIP interactions:2 interactions with chain L- Metal complexes: L:D.130, L:D.134
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Miotto, M.C. et al., Structural basis for ryanodine receptor type 2 leak in heart failure and arrhythmogenic disorders. Nat Commun (2024)
- Release Date
- 2023-11-22
- Peptides
- Ryanodine receptor 2: AGHI
Peptidyl-prolyl cis-trans isomerase FKBP1B: BCDE
Calmodulin-1: FJKL - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AG
BH
CI
DB
EC
FD
GE
HF
IJ
JK
LL
K - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 8uxl.1
Structure of PKA phosphorylated human RyR2-R420W in the primed state in the presence of calcium and calmodulin
Ryanodine receptor 2
Toggle Identical (AGHI)Peptidyl-prolyl cis-trans isomerase FKBP1B
Toggle Identical (BCDE)Calmodulin-1
Toggle Identical (FJKL)Related Entries With Identical Sequence
1iq5.1 | 1lvc.1 | 1lvc.2 | 1lvc.3 | 1wrz.1 | 2bki.1 | 2r28.1 | 2v01.1 | 2v02.1 | 2w73.1 | 2w73.2 | 2y4v.1 | 3hr4.1 | 3hr4.2 | 3hr4.3 | 3hr4.4 | 3j41.1 | 3oxq.1 | 3oxq.2 | 3sjq.1 | 3sui.1 | 4bw7.1 | 4bw7.2 | 4bw7.3 | 4bw8.1 | 4bw8.2 | 4byf.1 | 4byf.2 | 4c02.1 | 4dck.1 more...less...4dck.2 | 4g27.1 | 4g28.1 | 4j9y.1 | 4j9z.1 | 4jpz.1 | 4jpz.2 | 4jq0.1 | 4l79.1 | 4ovn.1 | 4ovn.2 | 4ovn.3 | 4ovn.4 | 4ovn.5 | 4q5u.1 | 4umo.1 | 4v0c.1 | 4zlk.1 | 5j03.1 | 5jqa.1 | 5k7l.1 | 5k7l.2 | 5k7l.3 | 5k8q.1 | 5nin.1 | 5nin.2 | 5t15.1 | 5t9m.1 | 5t9n.1 | 5t9r.1 | 5t9s.1 | 5t9v.1 | 5ta3.1 | 5tal.1 | 5tam.1 | 5tan.1 | 5tap.1 | 5taq.1 | 5tas.1 | 5tat.1 | 5tau.1 | 5tav.1 | 5taw.1 | 5tax.1 | 5tay.1 | 5taz.1 | 5tb0.1 | 5tb1.1 | 5tb2.1 | 5tb3.1 | 5tb4.1 | 5v02.1 | 5v03.1 | 5v7x.1 | 5vms.1 | 5vms.2 | 5vms.3 | 6b8l.1 | 6b8l.2 | 6b8l.3 | 6b8l.4 | 6b8m.1 | 6b8m.2 | 6b8m.3 | 6b8m.4 | 6b8n.1 | 6b8n.2 | 6b8n.3 | 6b8n.4 | 6b8p.1 | 6b8p.2 | 6b8p.3 | 6b8p.4 | 6b8q.1 | 6b8q.2 | 6b8q.3 | 6b8q.4 | 6cnm.1 | 6cnn.1 | 6cno.1 | 6dmw.1 | 6e2f.1 | 6e2g.1 | 6feg.1 | 6feh.1 | 6jgz.1 | 6jh6.1 | 6jhn.1 | 6ji0.1 | 6ji8.1 | 6jii.1 | 6jiu.1 | 6jiy.1 | 6jrr.1 | 6jrs.1 | 6jv2.1 | 6k4k.1 | 6k4k.2 | 6k4l.1 | 6k4l.2 | 6k4r.1 | 6k4r.2 | 6mba.1 | 6mc9.1 | 6mud.1 | 6n5w.1 | 6paw.1 | 6paw.2 | 6paw.3 | 6paw.4 | 6pbx.1 | 6pby.1 | 6pv6.1 | 6s5t.1 | 6sz5.1 | 6uzz.1 | 6v00.1 | 6v01.1 | 6xxf.1 | 6y4o.1 | 7b1g.1 | 7bf1.1 | 7bf2.1 | 7byl.1 | 7bym.1 | 7byn.1 | 7cr3.1 | 7cr4.1 | 7cr7.1 | 7jmf.1 | 7kl5.1 | 7m6a.1 | 7m6l.1 | 7sx3.1 | 7sx4.1 | 7tci.1 | 7tcp.1 | 7u9q.1 | 7u9r.1 | 7u9t.1 | 7u9x.1 | 7u9z.1 | 7ua1.1 | 7ua3.1 | 7ua4.1 | 7ua5.1 | 7ua9.1 | 7vnp.1 | 7vnq.1 | 7vnr.1 | 7wji.1 | 7wr4.1 | 7wr5.1 | 7xn4.1 | 7xn5.1 | 7xn6.1 | 8ahs.1 | 8bx7.1 | 8dgh.1 | 8dgk.1 | 8ijk.1 | 8j07.736 | 8jfk.1 | 8sik.1 | 8sim.1 | 8sin.1 | 8uq2.1 | 8uq3.1 | 8uq4.1 | 8uxc.1 | 8uxe.1 | 8uxf.1 | 8uxg.1 | 8uxh.1 | 8uxi.1 | 8uxm.1 | 8w41.1 | 8w4u.1 | 8x43.1 | 8xya.1 | 8xyb.1