- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-3-1-2-mer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.2: 20 residues within 4Å:- Chain B: L.9, A.10, W.13, R.14, P.15, V.21, V.22, R.50, G.51, V.52, G.53, K.54, T.55, S.56, L.217, R.218, L.221
- Chain C: E.147
- Ligands: BEF.3, MG.4
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:W.13, B:R.14, B:R.14, B:V.22, B:G.51, B:V.52, B:V.52, B:G.53, B:K.54, B:T.55, B:S.56
- Salt bridges: B:R.14, B:K.54, B:R.218, B:R.218
ADP.6: 19 residues within 4Å:- Chain C: A.10, W.13, R.14, P.15, V.21, V.22, R.50, G.51, V.52, G.53, K.54, T.55, S.56, L.217, R.218, L.221
- Chain D: E.147
- Ligands: BEF.7, MG.8
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:W.13, C:R.14, C:V.22, C:G.51, C:V.52, C:V.52, C:G.53, C:K.54, C:T.55, C:S.56
- Salt bridges: C:R.14, C:K.54, C:R.218, C:R.218
ADP.10: 19 residues within 4Å:- Chain D: A.10, W.13, R.14, P.15, V.21, V.22, R.50, G.51, V.52, G.53, K.54, T.55, S.56, L.217, R.218, L.221
- Chain E: R.161
- Ligands: BEF.11, MG.12
14 PLIP interactions:1 interactions with chain E, 13 interactions with chain D- Hydrogen bonds: E:R.161, D:W.13, D:V.22, D:G.51, D:V.52, D:V.52, D:G.53, D:K.54, D:T.55, D:S.56
- Salt bridges: D:R.14, D:K.54, D:R.218, D:R.218
- 3 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)
BEF.3: 10 residues within 4Å:- Chain B: K.54, T.55, E.130, T.160, R.218
- Chain C: E.147, T.168, R.172
- Ligands: ADP.2, MG.4
No protein-ligand interaction detected (PLIP)BEF.7: 10 residues within 4Å:- Chain C: K.54, T.55, D.129, E.130, T.160, R.218
- Chain D: E.147, R.172
- Ligands: ADP.6, MG.8
No protein-ligand interaction detected (PLIP)BEF.11: 7 residues within 4Å:- Chain D: K.54, T.55, E.130, T.160
- Chain E: R.161
- Ligands: ADP.10, MG.12
No protein-ligand interaction detected (PLIP)- 3 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 3 residues within 4Å:- Chain B: T.55
- Ligands: ADP.2, BEF.3
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:T.55
MG.8: 5 residues within 4Å:- Chain C: T.55, D.129
- Chain D: E.147
- Ligands: ADP.6, BEF.7
2 PLIP interactions:2 interactions with chain C- Metal complexes: C:T.55, C:D.129
MG.12: 5 residues within 4Å:- Chain D: T.55
- Chain E: E.136, R.161
- Ligands: ADP.10, BEF.11
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:T.55
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Landeck, J.T. et al., Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem. (2024)
- Release Date
- 2024-03-27
- Peptides
- DNA polymerase III subunit delta: A
DNA polymerase III subunit tau: BCD
DNA polymerase III subunit delta': E
Beta sliding clamp: FG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-1-3-1-2-mer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 3 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Landeck, J.T. et al., Differences between bacteria and eukaryotes in clamp loader mechanism, a conserved process underlying DNA replication. J.Biol.Chem. (2024)
- Release Date
- 2024-03-27
- Peptides
- DNA polymerase III subunit delta: A
DNA polymerase III subunit tau: BCD
DNA polymerase III subunit delta': E
Beta sliding clamp: FG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G