SMTL ID : 8vfv.1

HIV Env BG505_MD39_B16 SOSIP boosting trimer in complex with B16_d77.5 mouse Fab and RM20A3 Fab

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-3-3-3-1-1-mer
Ligands
3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
36 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Xie, Z. et al., mRNA-LNP HIV-1 trimer boosters elicit precursors to broad neutralizing antibodies. Science (2024)
Release Date
2024-05-15
Peptides
RM20A3 Fab heavy chain: AEK
RM20A3 Fab light chain: BFL
Envelope glycoprotein gp120: CIM
Transmembrane protein gp41: DJN
B16_d77.5 mouse Fab heavy chain Fv: G
B16_d77.5 mouse Fab light chain Fv: H
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
G
E
C
K
M
B
I
F
D
L
N
C
E
I
A
M
J
D
F
J
B
N
K
G
H
H
L

RM20A3 Fab heavy chain

Toggle Identical (EK)

RM20A3 Fab light chain

Toggle Identical (BFL)

Envelope glycoprotein gp120

Toggle Identical (CIM)

Transmembrane protein gp41

Toggle Identical (DJN)

B16_d77.5 mouse Fab heavy chain Fv

B16_d77.5 mouse Fab light chain Fv

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