SMTL ID : 8vmi.1

PRC2_AJ119-450 bound to H3K4me3

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.10 Å

Oligo State

hetero-1-2-1-1-1-1-1-mer

Ligands

1 x ALA- ARG- THR- M3L- GLN- THR: Histone H3.1(Non-covalent)

ALA-ARG-THR-M3L-GLN-THR.1: 11 residues within 4Å: Chain A: P.95, Y.148, M.256, N.307, Y.308, C.324, I.363, W.364, Y.365, R.414, D.430 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.364, A:Y.365 Hydrogen bonds: A:N.307, A:W.364, A:R.414, A:R.414 Salt bridges: A:E.238 pi-Cation interactions: A:F.97, A:Y.148, A:Y.365

7 x ZN: ZINC ION(Non-covalent)

ZN.2: 7 residues within 4Å: Chain E: C.523, H.525, C.530, C.534, C.543, C.549 Ligands: ZN.4 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:C.523, E:C.530, E:C.534 ZN.3: 5 residues within 4Å: Chain E: Y.520, C.523, C.536, C.543, C.547 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:C.536, E:C.543, E:C.547 ZN.4: 4 residues within 4Å: Chain E: C.543, C.549, C.553 Ligands: ZN.2 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:C.543, E:C.549, E:C.553 ZN.5: 8 residues within 4Å: Chain E: C.560, C.562, C.566, C.571, C.580, C.588 Ligands: ZN.6, ZN.7 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.560, E:C.562, E:C.566, E:C.571 ZN.6: 7 residues within 4Å: Chain E: C.560, C.566, C.580, C.588, C.601 Ligands: ZN.5, ZN.7 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:C.560, E:C.566, E:C.580, E:C.588, E:C.601 ZN.7: 6 residues within 4Å: Chain E: C.560, C.573, C.580, C.585 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.560, E:C.573, E:C.580, E:C.585 ZN.8: 3 residues within 4Å: Chain E: C.286, C.294, H.297 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:C.286, E:C.294, E:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cookis, T. et al., Structural basis for the inhibition of PRC2 by active transcription histone posttranslational modifications. To Be Published

Release Date

2025-01-15

Peptides

Polycomb protein EED: A
Polycomb protein SUZ12: BC
Histone-binding protein RBBP4: D
EZH2: E
Protein Jumonji: F
Isoform 3 of Zinc finger protein AEBP2: G
Histone H3.1t: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
L

C
T

D
N

E
C

F
F

G
P

H
I

Polycomb protein EED

Polycomb protein SUZ12

Histone-binding protein RBBP4

EZH2

Protein Jumonji

Isoform 3 of Zinc finger protein AEBP2

Histone H3.1t

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