SMTL ID : 7at8.1

Histone H3 recognition by nucleosome-bound PRC2 subunit EZH2.

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-2-2-2-2-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.286, C.289, C.294, H.297 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.286, A:C.289, A:C.294, A:H.297 ZN.2: 6 residues within 4Å: Chain A: C.548, C.561, C.567, C.571 Ligands: ZN.3, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.548, A:C.561, A:C.567, A:C.571 ZN.3: 6 residues within 4Å: Chain A: C.541, H.543, C.548, C.552 Ligands: ZN.2, ZN.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.541, A:H.543, A:C.548, A:C.552 ZN.4: 6 residues within 4Å: Chain A: C.541, C.554, C.561, C.565 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.541, A:C.554, A:C.561, A:C.565 ZN.5: 7 residues within 4Å: Chain A: C.578, C.584, C.598, C.606, C.619 Ligands: ZN.6, ZN.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.584, A:C.598, A:C.606, A:C.619 ZN.6: 6 residues within 4Å: Chain A: C.578, C.591, C.598, C.603 Ligands: ZN.5, ZN.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.578, A:C.591, A:C.598, A:C.603 ZN.7: 6 residues within 4Å: Chain A: C.578, C.580, C.584, C.589 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.578, A:C.580, A:C.584, A:C.589

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.8: 12 residues within 4Å: Chain A: V.639, A.640, G.641, W.642, M.680, C.681, S.682, F.683, F.704, N.706, A.751, L.752 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.640, A:A.640, A:W.642, A:S.682, A:S.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finogenova, K. et al., Structural basis for PRC2 decoding of active histone methylation marks H3K36me2/3. Elife (2020)

Release Date

2020-12-09

Peptides

Isoform 2 of Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2: A
Polycomb protein SUZ12: B
Histone H3.2: CG
Histone H4: DH
Histone H2A: EI
Histone H2B 1.1: FJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

G
H

D
E

H
I

E
F

I
J

F
G

J
K

Isoform 2 of Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2,Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2,Isoform 2 of Histone-lysine N-methyltransferase EZH2

Polycomb protein SUZ12

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

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