SMTL ID : 8vo9.1

Cryo-EM structure of fascin crosslinked F-actin (Eigen_middle)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-6-mer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain B: G.11, S.12, G.13, L.14, K.16, G.154, D.155, R.208, K.211, E.212, G.299, G.300, T.301, M.303, Y.304, K.334 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.13, B:L.14, B:D.155, B:D.155, B:D.155, B:K.211, B:E.212, B:E.212, B:G.300 Salt bridges: B:K.16, B:K.16, B:K.334 pi-Stacking: B:Y.304 ADP.3: 14 residues within 4Å: Chain C: G.11, S.12, G.13, L.14, K.16, G.154, D.155, K.211, E.212, G.300, T.301, Y.304, K.334 Ligands: MG.4 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.13, C:L.14, C:D.155, C:D.155, C:K.211, C:E.212, C:G.300 Salt bridges: C:K.16, C:K.16 pi-Stacking: C:Y.304 ADP.5: 16 residues within 4Å: Chain D: G.11, S.12, G.13, L.14, K.16, G.154, D.155, R.208, K.211, E.212, G.299, G.300, T.301, Y.304, K.334 Ligands: MG.6 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:S.12, D:G.13, D:L.14, D:D.155, D:D.155, D:D.155, D:D.155, D:K.211, D:E.212, D:E.212, D:G.300, D:K.334 Salt bridges: D:K.16, D:K.16, D:K.334 pi-Stacking: D:Y.304 ADP.7: 15 residues within 4Å: Chain E: G.11, S.12, G.13, L.14, K.16, G.154, D.155, K.211, E.212, G.299, G.300, T.301, Y.304, K.334 Ligands: MG.8 13 PLIP interactions: 13 interactions with chain E Hydrogen bonds: E:S.12, E:G.13, E:L.14, E:D.155, E:D.155, E:D.155, E:D.155, E:K.211, E:E.212, E:E.212, E:G.300 Salt bridges: E:K.16, E:K.16 ADP.9: 16 residues within 4Å: Chain F: G.11, S.12, G.13, L.14, K.16, G.154, D.155, R.208, K.211, E.212, G.300, T.301, M.303, Y.304, K.334 Ligands: MG.10 12 PLIP interactions: 12 interactions with chain F Hydrogen bonds: F:S.12, F:G.13, F:L.14, F:D.155, F:D.155, F:K.211, F:E.212, F:E.212, F:G.300 Salt bridges: F:K.16, F:K.16 pi-Stacking: F:Y.304 ADP.11: 16 residues within 4Å: Chain G: G.11, S.12, G.13, L.14, K.16, G.154, D.155, R.208, K.211, E.212, G.299, G.300, T.301, Y.304, K.334 Ligands: MG.12 15 PLIP interactions: 15 interactions with chain G Hydrogen bonds: G:S.12, G:G.13, G:L.14, G:D.155, G:D.155, G:D.155, G:D.155, G:K.211, G:E.212, G:E.212, G:G.300, G:K.334 Salt bridges: G:K.16, G:K.16 pi-Stacking: G:Y.304

6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.2: 2 residues within 4Å: Chain B: Q.135 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 2 residues within 4Å: Chain C: D.152 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 3 residues within 4Å: Chain E: D.9, Q.135 Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 2 residues within 4Å: Chain F: D.152 Ligands: ADP.9 No protein-ligand interaction detected (PLIP) MG.12: 2 residues within 4Å: Chain G: Q.135 Ligands: ADP.11 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gong, R. et al., Fascin structural plasticity mediates flexible actin bundle construction. Nat.Struct.Mol.Biol. (2025)

Release Date

2025-01-15

Peptides

Fascin: A
Actin, alpha skeletal muscle: BCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Fascin

Actin, alpha skeletal muscle

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