SMTL ID : 8vrt.1

The structure of LSD1-CoREST-HDAC1 in complex with KBTBD4R313PRR mutant

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain C: D.176, H.178, D.264 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.176, C:D.176, C:H.178, C:D.264

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Covalent)

IHP.2: 14 residues within 4Å: Chain B: H.275, R.299, W.301, W.312 Chain C: Y.23, Q.26, G.27, H.28, K.31, R.270, R.306 Chain D: K.128, Y.149, K.153 18 PLIP interactions: 8 interactions with chain C, 3 interactions with chain B, 7 interactions with chain D Hydrogen bonds: C:Y.23, C:G.27, C:R.270, C:R.306, D:Y.149 Salt bridges: C:K.31, C:K.31, C:R.270, C:R.270, B:H.275, B:H.275, B:R.299, D:K.128, D:K.128, D:K.128, D:K.153, D:K.153, D:K.153

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xie, X. et al., Molecular Mechanism Underlying KBTBD4 Cancer Mutation-Driven Degradation of HDAC Corepressor Complexes. To Be Published

Release Date

2024-11-27

Peptides

Kelch repeat and BTB domain-containing protein 4: AB
Histone deacetylase 1: C
REST corepressor 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Kelch repeat and BTB domain-containing protein 4

Histone deacetylase 1

REST corepressor 1

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