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SMTL ID : 8w42.1
X-ray crystal structure of V30M-TTR in complex with resveratrol
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.45 Å
Oligo State
homo-tetramer
Ligands
4 x
STL
:
RESVERATROL
(Non-covalent)
STL.1:
11 residues within 4Å:
Chain A:
K.47
,
L.49
,
A.140
,
L.142
,
S.149
Chain C:
K.47
,
T.138
,
A.140
,
L.142
,
S.149
Ligands:
STL.4
12
PLIP interactions
:
8 interactions with chain A
,
4 interactions with chain C
Hydrophobic interactions:
A:K.47
,
A:L.49
,
A:A.140
,
A:L.142
,
A:L.142
,
C:A.140
Hydrogen bonds:
A:K.47
,
A:K.47
,
A:S.149
,
C:S.149
Water bridges:
C:K.47
,
C:K.47
STL.2:
12 residues within 4Å:
Chain B:
K.47
,
L.49
,
T.138
,
A.140
,
L.142
,
S.149
Chain D:
K.47
,
L.49
,
A.140
,
L.142
,
S.149
Ligands:
STL.5
13
PLIP interactions
:
6 interactions with chain B
,
7 interactions with chain D
Hydrophobic interactions:
B:A.140
,
B:L.142
,
D:K.47
,
D:L.49
,
D:A.140
,
D:L.142
Hydrogen bonds:
B:S.149
,
B:S.149
,
D:S.149
Water bridges:
B:K.47
,
B:K.47
,
D:K.47
,
D:K.47
STL.4:
11 residues within 4Å:
Chain A:
K.47
,
T.138
,
A.140
,
L.142
,
S.149
Chain C:
K.47
,
L.49
,
A.140
,
L.142
,
S.149
Ligands:
STL.1
12
PLIP interactions
:
4 interactions with chain A
,
8 interactions with chain C
Hydrophobic interactions:
A:A.140
,
C:K.47
,
C:L.49
,
C:A.140
,
C:L.142
,
C:L.142
Hydrogen bonds:
A:S.149
,
C:K.47
,
C:K.47
,
C:S.149
Water bridges:
A:K.47
,
A:K.47
STL.5:
12 residues within 4Å:
Chain B:
K.47
,
L.49
,
A.140
,
L.142
,
S.149
Chain D:
K.47
,
L.49
,
T.138
,
A.140
,
L.142
,
S.149
Ligands:
STL.2
13
PLIP interactions
:
7 interactions with chain B
,
6 interactions with chain D
Hydrophobic interactions:
B:K.47
,
B:L.49
,
B:A.140
,
B:L.142
,
D:A.140
,
D:L.142
Hydrogen bonds:
B:S.149
,
D:S.149
,
D:S.149
Water bridges:
B:K.47
,
B:K.47
,
D:K.47
,
D:K.47
2 x
NA
:
SODIUM ION
(Non-functional Binders)
NA.3:
2 residues within 4Å:
Chain B:
D.131
,
S.132
1
PLIP interactions
:
1 interactions with chain B
Hydrogen bonds:
B:S.132
NA.6:
2 residues within 4Å:
Chain D:
D.131
,
S.132
1
PLIP interactions
:
1 interactions with chain D
Hydrogen bonds:
D:S.132
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Yokoyama, T. et al., Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin. J.Med.Chem. (2023)
Release Date
2023-11-22
Peptides
Transthyretin:
A
B
C
D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
A
D
B
Export Alignment
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Transthyretin
Toggle Identical (ABCD)
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