SMTL ID : 8w43.1

X-ray crystal structure of V30M-TTR in complex with piceatannol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

homo-tetramer

Ligands

4 x PIT: PICEATANNOL(Non-covalent)

PIT.1: 14 residues within 4Å: Chain A: K.47, L.49, A.140, L.142, S.149, T.150 Chain C: K.47, L.49, A.140, L.142, S.149, T.150, T.151 Ligands: PIT.4 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:L.49, A:A.140, A:L.142, C:K.47, C:L.49, C:A.140 Hydrogen bonds: A:K.47, A:S.149, C:K.47, C:S.149 PIT.3: 14 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, S.149, T.150, T.151 Chain D: K.47, L.49, L.142, S.149, T.150, T.151 Ligands: PIT.6 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:L.49, B:A.140, B:L.142, D:L.49, D:T.151 Hydrogen bonds: B:K.47, D:K.47 PIT.4: 14 residues within 4Å: Chain A: K.47, L.49, A.140, L.142, S.149, T.150, T.151 Chain C: K.47, L.49, A.140, L.142, S.149, T.150 Ligands: PIT.1 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:K.47, A:L.49, A:A.140, C:L.49, C:A.140, C:L.142 Hydrogen bonds: A:K.47, A:S.149, C:K.47, C:S.149 PIT.6: 14 residues within 4Å: Chain B: K.47, L.49, L.142, S.149, T.150, T.151 Chain D: K.47, L.49, A.140, L.142, S.149, T.150, T.151 Ligands: PIT.3 7 PLIP interactions: 4 interactions with chain D, 3 interactions with chain B Hydrophobic interactions: D:L.49, D:A.140, D:L.142, B:L.49, B:T.151 Hydrogen bonds: D:K.47, B:K.47

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 1 residues within 4Å: Chain A: D.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.131 NA.5: 1 residues within 4Å: Chain C: D.131 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Resveratrol Derivatives Inhibit Transthyretin Fibrillization: Structural Insights into the Interactions between Resveratrol Derivatives and Transthyretin. J.Med.Chem. (2023)

Release Date

2023-11-22

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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