SMTL ID : 8w7j.1

Cryo-EM structure of ClassIII Lanthipeptide modification enzyme PneKC with chain A bounded to substrate PneA and GTP.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.98 Å

Oligo State

hetero-2-1-mer

Ligands

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE

GTP.1: 11 residues within 4Å: Chain A: I.221, R.222, I.229, I.242, H.298, D.351, H.353, I.368, D.369, E.371, Q.372 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.222, A:I.368, A:Q.372 Salt bridges: A:R.222, A:R.222, A:H.353, A:H.353

1 x PO4: PHOSPHATE ION

PO4.2: 2 residues within 4Å: Chain A: V.156, R.183 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.183

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., Mechanistic insights into lanthipeptide modification by a distinct subclass of LanKC enzyme that forms dimers. Nat Commun (2024)

Release Date

2024-08-28

Peptides

Protein kinase domain-containing protein: AC
PneA LP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

Protein kinase domain-containing protein

PneA LP

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