SMTL ID : 7qol.1

Tail assembly of the phicrAss001 virion with C6 symmetry imposed

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-4-4-2-6-4-1-1-mer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: A.114, E.119, Q.160 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:A.114, A:E.119 MG.2: 4 residues within 4Å: Chain A: Y.606 Chain O: A.114, E.119, Q.160 3 PLIP interactions: 2 interactions with chain O, 1 interactions with chain A Metal complexes: O:A.114, O:E.119, A:Y.606

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayfield, O.W. et al., Structural atlas of a human gut crassvirus. Nature (2023)

Release Date

2023-03-29

Peptides

Portal protein gp20: AO
Ring protein 1 gp43: BP
Ring protein 2 gp40: CQ
Ring protein 3 gp35: DR
Ring protein 4/5 gp34: EFST
Tail hub protein A gp38: GHUV
Tail hub protein B gp39: IW
Tail fiber protein gp22: JKLXYZ
Cargo protein 1 gp45: MN01
Muzzle protein gp44: 2
Muzzle bound helix: 3

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O
O

B
B

P
Q

C
C

Q
S

D
D

R
T

E
E

F
F

S
U

T
V

G
G

H
H

U
W

V
Z

I
I

W
a

J
J

K
K

L
L

X
b

Y
c

Z
d

M
M

N
N

0
e

1
f

2
P

3
R

Portal protein gp20

Ring protein 1 gp43

Ring protein 2 gp40

Ring protein 3 gp35

Ring protein 4/5 gp34

Tail hub protein A gp38

Tail hub protein B gp39

Tail fiber protein gp22

Cargo protein 1 gp45

Muzzle protein gp44

Muzzle bound helix

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