SMTL ID : 8xgj.1

Human Cx36/GJD2 gap junction channel in complex with mefloquine.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-12-mer

Ligands

12 x YMZ: (11R,12S)- Mefloquine(Non-covalent)

YMZ.1: 9 residues within 4Å: Chain A: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 Chain F: I.40 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.38, A:A.39, A:V.80 YMZ.9: 9 residues within 4Å: Chain A: I.40 Chain B: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.38, B:A.39, B:V.80 YMZ.17: 9 residues within 4Å: Chain B: I.40 Chain C: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:V.38, C:A.39, C:V.80 YMZ.25: 9 residues within 4Å: Chain C: I.40 Chain D: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:V.38, D:A.39, D:V.80 YMZ.33: 9 residues within 4Å: Chain D: I.40 Chain E: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:V.38, E:A.39, E:V.80 YMZ.41: 9 residues within 4Å: Chain E: I.40 Chain F: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain F Hydrophobic interactions: F:V.38, F:A.39, F:V.80 YMZ.49: 9 residues within 4Å: Chain G: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 Chain L: I.40 3 PLIP interactions: 3 interactions with chain G Hydrophobic interactions: G:V.38, G:A.39, G:V.80 YMZ.57: 9 residues within 4Å: Chain G: I.40 Chain H: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain H Hydrophobic interactions: H:V.38, H:A.39, H:V.80 YMZ.65: 9 residues within 4Å: Chain H: I.40 Chain I: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain I Hydrophobic interactions: I:V.38, I:A.39, I:V.80 YMZ.73: 9 residues within 4Å: Chain I: I.40 Chain J: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain J Hydrophobic interactions: J:V.38, J:A.39, J:V.80 YMZ.81: 9 residues within 4Å: Chain J: I.40 Chain K: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain K Hydrophobic interactions: K:V.38, K:A.39, K:V.80 YMZ.89: 9 residues within 4Å: Chain K: I.40 Chain L: I.35, V.38, A.39, I.40, E.43, V.80, I.83, I.84 3 PLIP interactions: 3 interactions with chain L Hydrophobic interactions: L:V.38, L:A.39, L:V.80

84 x MC3: 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)(Non-functional Binders)

MC3.2: 5 residues within 4Å: Chain A: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.3: 8 residues within 4Å: Chain A: I.73, R.77, Y.78, F.81, L.220 Chain F: E.249, V.252, F.253 Ligand excluded by PLIP MC3.4: 7 residues within 4Å: Chain A: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.5: 2 residues within 4Å: Chain A: F.81 Ligands: MC3.48 Ligand excluded by PLIP MC3.6: 9 residues within 4Å: Chain A: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.7 Ligand excluded by PLIP MC3.7: 2 residues within 4Å: Chain A: V.255 Ligands: MC3.6 Ligand excluded by PLIP MC3.8: 11 residues within 4Å: Chain A: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain B: F.81, M.85, T.88 Ligands: MC3.13 Ligand excluded by PLIP MC3.10: 5 residues within 4Å: Chain B: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.11: 8 residues within 4Å: Chain A: E.249, V.252, F.253 Chain B: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.12: 7 residues within 4Å: Chain B: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.13: 2 residues within 4Å: Chain B: F.81 Ligands: MC3.8 Ligand excluded by PLIP MC3.14: 9 residues within 4Å: Chain B: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.15 Ligand excluded by PLIP MC3.15: 2 residues within 4Å: Chain B: V.255 Ligands: MC3.14 Ligand excluded by PLIP MC3.16: 11 residues within 4Å: Chain B: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain C: F.81, M.85, T.88 Ligands: MC3.21 Ligand excluded by PLIP MC3.18: 5 residues within 4Å: Chain C: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.19: 8 residues within 4Å: Chain B: E.249, V.252, F.253 Chain C: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.20: 7 residues within 4Å: Chain C: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.21: 2 residues within 4Å: Chain C: F.81 Ligands: MC3.16 Ligand excluded by PLIP MC3.22: 9 residues within 4Å: Chain C: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.23 Ligand excluded by PLIP MC3.23: 2 residues within 4Å: Chain C: V.255 Ligands: MC3.22 Ligand excluded by PLIP MC3.24: 11 residues within 4Å: Chain C: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain D: F.81, M.85, T.88 Ligands: MC3.29 Ligand excluded by PLIP MC3.26: 5 residues within 4Å: Chain D: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.27: 8 residues within 4Å: Chain C: E.249, V.252, F.253 Chain D: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.28: 7 residues within 4Å: Chain D: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.29: 2 residues within 4Å: Chain D: F.81 Ligands: MC3.24 Ligand excluded by PLIP MC3.30: 9 residues within 4Å: Chain D: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.31 Ligand excluded by PLIP MC3.31: 2 residues within 4Å: Chain D: V.255 Ligands: MC3.30 Ligand excluded by PLIP MC3.32: 11 residues within 4Å: Chain D: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain E: F.81, M.85, T.88 Ligands: MC3.37 Ligand excluded by PLIP MC3.34: 5 residues within 4Å: Chain E: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.35: 8 residues within 4Å: Chain D: E.249, V.252, F.253 Chain E: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.36: 7 residues within 4Å: Chain E: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.37: 2 residues within 4Å: Chain E: F.81 Ligands: MC3.32 Ligand excluded by PLIP MC3.38: 9 residues within 4Å: Chain E: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.39 Ligand excluded by PLIP MC3.39: 2 residues within 4Å: Chain E: V.255 Ligands: MC3.38 Ligand excluded by PLIP MC3.40: 11 residues within 4Å: Chain E: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain F: F.81, M.85, T.88 Ligands: MC3.45 Ligand excluded by PLIP MC3.42: 5 residues within 4Å: Chain F: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.43: 8 residues within 4Å: Chain E: E.249, V.252, F.253 Chain F: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.44: 7 residues within 4Å: Chain F: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.45: 2 residues within 4Å: Chain F: F.81 Ligands: MC3.40 Ligand excluded by PLIP MC3.46: 9 residues within 4Å: Chain F: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.47 Ligand excluded by PLIP MC3.47: 2 residues within 4Å: Chain F: V.255 Ligands: MC3.46 Ligand excluded by PLIP MC3.48: 11 residues within 4Å: Chain A: F.81, M.85, T.88 Chain F: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Ligands: MC3.5 Ligand excluded by PLIP MC3.50: 5 residues within 4Å: Chain G: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.51: 8 residues within 4Å: Chain G: I.73, R.77, Y.78, F.81, L.220 Chain L: E.249, V.252, F.253 Ligand excluded by PLIP MC3.52: 7 residues within 4Å: Chain G: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.53: 2 residues within 4Å: Chain G: F.81 Ligands: MC3.96 Ligand excluded by PLIP MC3.54: 9 residues within 4Å: Chain G: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.55 Ligand excluded by PLIP MC3.55: 2 residues within 4Å: Chain G: V.255 Ligands: MC3.54 Ligand excluded by PLIP MC3.56: 11 residues within 4Å: Chain G: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain H: F.81, M.85, T.88 Ligands: MC3.61 Ligand excluded by PLIP MC3.58: 5 residues within 4Å: Chain H: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.59: 8 residues within 4Å: Chain G: E.249, V.252, F.253 Chain H: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.60: 7 residues within 4Å: Chain H: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.61: 2 residues within 4Å: Chain H: F.81 Ligands: MC3.56 Ligand excluded by PLIP MC3.62: 9 residues within 4Å: Chain H: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.63 Ligand excluded by PLIP MC3.63: 2 residues within 4Å: Chain H: V.255 Ligands: MC3.62 Ligand excluded by PLIP MC3.64: 11 residues within 4Å: Chain H: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain I: F.81, M.85, T.88 Ligands: MC3.69 Ligand excluded by PLIP MC3.66: 5 residues within 4Å: Chain I: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.67: 8 residues within 4Å: Chain H: E.249, V.252, F.253 Chain I: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.68: 7 residues within 4Å: Chain I: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.69: 2 residues within 4Å: Chain I: F.81 Ligands: MC3.64 Ligand excluded by PLIP MC3.70: 9 residues within 4Å: Chain I: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.71 Ligand excluded by PLIP MC3.71: 2 residues within 4Å: Chain I: V.255 Ligands: MC3.70 Ligand excluded by PLIP MC3.72: 11 residues within 4Å: Chain I: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain J: F.81, M.85, T.88 Ligands: MC3.77 Ligand excluded by PLIP MC3.74: 5 residues within 4Å: Chain J: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.75: 8 residues within 4Å: Chain I: E.249, V.252, F.253 Chain J: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.76: 7 residues within 4Å: Chain J: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.77: 2 residues within 4Å: Chain J: F.81 Ligands: MC3.72 Ligand excluded by PLIP MC3.78: 9 residues within 4Å: Chain J: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.79 Ligand excluded by PLIP MC3.79: 2 residues within 4Å: Chain J: V.255 Ligands: MC3.78 Ligand excluded by PLIP MC3.80: 11 residues within 4Å: Chain J: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain K: F.81, M.85, T.88 Ligands: MC3.85 Ligand excluded by PLIP MC3.82: 5 residues within 4Å: Chain K: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.83: 8 residues within 4Å: Chain J: E.249, V.252, F.253 Chain K: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.84: 7 residues within 4Å: Chain K: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.85: 2 residues within 4Å: Chain K: F.81 Ligands: MC3.80 Ligand excluded by PLIP MC3.86: 9 residues within 4Å: Chain K: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.87 Ligand excluded by PLIP MC3.87: 2 residues within 4Å: Chain K: V.255 Ligands: MC3.86 Ligand excluded by PLIP MC3.88: 11 residues within 4Å: Chain K: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Chain L: F.81, M.85, T.88 Ligands: MC3.93 Ligand excluded by PLIP MC3.90: 5 residues within 4Å: Chain L: T.248, T.251, V.252, V.255, F.256 Ligand excluded by PLIP MC3.91: 8 residues within 4Å: Chain K: E.249, V.252, F.253 Chain L: I.73, R.77, Y.78, F.81, L.220 Ligand excluded by PLIP MC3.92: 7 residues within 4Å: Chain L: Y.78, L.209, G.212, F.213, G.216, F.219, L.220 Ligand excluded by PLIP MC3.93: 2 residues within 4Å: Chain L: F.81 Ligands: MC3.88 Ligand excluded by PLIP MC3.94: 9 residues within 4Å: Chain L: F.223, S.224, T.251, V.255, F.258, A.259, G.262, I.263 Ligands: MC3.95 Ligand excluded by PLIP MC3.95: 2 residues within 4Å: Chain L: V.255 Ligands: MC3.94 Ligand excluded by PLIP MC3.96: 11 residues within 4Å: Chain G: F.81, M.85, T.88 Chain L: V.29, V.30, F.33, F.256, A.259, V.260, I.263 Ligands: MC3.53 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Mefloquine-induced conformational shift in Cx36 N-terminal helix leading to channel closure mediated by lipid bilayer. Nat Commun (2024)

Release Date

2024-11-06

Peptides

Gap junction delta-2 protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Membrane

We predict this structure to be a membrane protein.
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Gap junction delta-2 protein

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