SMTL ID : 8xl6.1

Structure of human 3-methylcrotonyl-CoA carboxylase at apo-state (MCC-Apo)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x BTN: BIOTIN(Covalent)

BTN.1: 11 residues within 4Å: Chain A: M.680, K.681 Chain D: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain J: L.246, A.250 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain J Hydrogen bonds: D:F.407, D:M.408, D:Q.477 Hydrophobic interactions: J:L.246 BTN.2: 11 residues within 4Å: Chain C: M.680, K.681 Chain F: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain L: L.246, A.250 5 PLIP interactions: 2 interactions with chain L, 3 interactions with chain F Hydrophobic interactions: L:L.246, L:A.250 Hydrogen bonds: F:F.407, F:M.408, F:Q.477 BTN.3: 11 residues within 4Å: Chain B: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain E: M.680, K.681 Chain H: L.246, A.250 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain H Hydrogen bonds: B:F.407, B:M.408, B:Q.477 Hydrophobic interactions: H:L.246, H:A.250 BTN.4: 11 residues within 4Å: Chain F: L.246, A.250 Chain G: M.680, K.681 Chain L: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain F Hydrogen bonds: L:F.407, L:M.408, L:Q.477 Hydrophobic interactions: F:L.246 BTN.5: 11 residues within 4Å: Chain B: L.246, A.250 Chain H: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain I: M.680, K.681 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain B Hydrogen bonds: H:F.407, H:M.408, H:Q.477 Hydrophobic interactions: B:L.246, B:A.250 BTN.6: 11 residues within 4Å: Chain D: L.246, A.250 Chain J: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain K: M.680, K.681 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain D Hydrogen bonds: J:F.407, J:M.408, J:Q.477 Hydrophobic interactions: D:L.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, F. et al., Structural insights into human propionyl-CoA carboxylase (PCC) and 3-methylcrotonyl-CoA carboxylase (MCC). Elife (2024)

Release Date

2024-10-30

Peptides

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial: ACEGIK
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial

Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial

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