SMTL ID : 8xl7.1

Structure of human 3-methylcrotonyl-CoA carboxylase in complex with acetyl-CoA (MCC-ACO)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x BTN: BIOTIN(Covalent)

BTN.1: 13 residues within 4Å: Chain A: M.680, K.681 Chain D: T.405, F.407, Y.445, A.447, G.448, V.472, M.473, G.474 Chain J: A.218, L.241, L.246 4 PLIP interactions: 1 interactions with chain A, 2 interactions with chain D, 1 interactions with chain J Hydrophobic interactions: A:K.681 Hydrogen bonds: D:A.447, D:G.448, J:A.218 BTN.4: 13 residues within 4Å: Chain C: M.680, K.681 Chain F: T.405, F.407, Y.445, A.447, G.448, V.472, M.473, G.474 Chain L: A.218, L.241, L.246 4 PLIP interactions: 1 interactions with chain L, 2 interactions with chain F, 1 interactions with chain C Hydrogen bonds: L:A.218, F:A.447, F:G.448 Hydrophobic interactions: C:K.681 BTN.5: 12 residues within 4Å: Chain B: T.405, F.407, Y.445, A.447, G.448, V.472, M.473 Chain E: M.680, K.681 Chain H: A.218, L.241, L.246 4 PLIP interactions: 2 interactions with chain B, 1 interactions with chain E, 1 interactions with chain H Hydrogen bonds: B:A.447, B:G.448, H:A.218 Hydrophobic interactions: E:K.681 BTN.7: 13 residues within 4Å: Chain F: A.218, L.241, L.246 Chain G: M.680, K.681 Chain L: T.405, F.407, Y.445, A.447, G.448, V.472, M.473, G.474 6 PLIP interactions: 4 interactions with chain L, 1 interactions with chain F, 1 interactions with chain G Hydrophobic interactions: L:M.473, G:K.681 Hydrogen bonds: L:A.447, L:G.448, L:G.474, F:A.218 BTN.8: 12 residues within 4Å: Chain B: A.218, L.241, L.246 Chain H: T.405, F.407, Y.445, A.447, G.448, M.473, G.474 Chain I: M.680, K.681 6 PLIP interactions: 1 interactions with chain I, 4 interactions with chain H, 1 interactions with chain B Hydrophobic interactions: I:K.681, H:M.473 Hydrogen bonds: H:A.447, H:G.448, H:G.474, B:A.218 BTN.11: 13 residues within 4Å: Chain D: A.218, L.241, L.246 Chain J: T.405, F.407, Y.445, A.447, G.448, V.472, M.473, G.474 Chain K: M.680, K.681 6 PLIP interactions: 1 interactions with chain D, 4 interactions with chain J, 1 interactions with chain K Hydrogen bonds: D:A.218, J:A.447, J:G.448, J:G.474 Hydrophobic interactions: J:M.473, K:K.681

6 x ACO: ACETYL COENZYME *A(Non-covalent)

ACO.2: 16 residues within 4Å: Chain B: R.78, K.141, G.142, S.173, G.174, G.175, A.176, Y.177, L.178, S.215, T.217 Chain H: V.472, M.473, V.481, I.485, Q.489 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain H Hydrogen bonds: B:G.174, B:A.176, B:L.178, B:T.217, H:Q.489 Salt bridges: B:R.78, B:K.141 Hydrophobic interactions: H:V.472, H:I.485 ACO.3: 13 residues within 4Å: Chain B: M.473, I.485, Q.489 Chain H: R.78, K.141, G.142, S.173, G.174, A.176, Y.177, L.178, S.215, T.217 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain H Hydrophobic interactions: B:I.485, H:L.178 Hydrogen bonds: B:Q.489, B:Q.489, B:Q.489, H:G.174, H:L.178 Salt bridges: H:R.78, H:K.141 ACO.6: 15 residues within 4Å: Chain F: R.78, K.141, G.142, G.174, G.175, A.176, Y.177, L.178, S.215, T.217 Chain L: V.472, M.473, V.481, I.485, Q.489 5 PLIP interactions: 4 interactions with chain F, 1 interactions with chain L Hydrogen bonds: F:A.176, F:L.178, L:Q.489 Salt bridges: F:R.78, F:K.141 ACO.9: 13 residues within 4Å: Chain D: R.78, K.141, G.142, G.174, G.175, A.176, Y.177, L.178, T.217 Chain J: M.473, V.481, I.485, Q.489 9 PLIP interactions: 5 interactions with chain D, 4 interactions with chain J Hydrogen bonds: D:G.174, D:L.178, D:T.217, J:Q.489, J:Q.489 Salt bridges: D:R.78, D:K.141 Hydrophobic interactions: J:V.481, J:I.485 ACO.10: 14 residues within 4Å: Chain D: V.472, M.473, V.481, I.485, Q.489 Chain J: R.78, K.141, S.173, G.174, A.176, Y.177, L.178, S.215, T.217 8 PLIP interactions: 4 interactions with chain D, 4 interactions with chain J Hydrophobic interactions: D:V.481, D:I.485, J:L.178 Hydrogen bonds: D:Q.489, D:Q.489, J:G.174 Salt bridges: J:R.78, J:K.141 ACO.12: 17 residues within 4Å: Chain F: V.472, M.473, V.481, I.485, Q.489 Chain L: R.78, K.141, G.142, S.173, G.174, G.175, A.176, Y.177, L.178, S.215, T.217, L.246 9 PLIP interactions: 5 interactions with chain L, 4 interactions with chain F Hydrophobic interactions: L:A.176, F:V.481, F:I.485 Hydrogen bonds: L:G.174, L:L.178, F:Q.489, F:Q.489 Salt bridges: L:R.78, L:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, F. et al., Structural insights into human propionyl-CoA carboxylase (PCC) and 3-methylcrotonyl-CoA carboxylase (MCC). Elife (2024)

Release Date

2024-10-30

Peptides

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial: ACEGIK
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial

Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial

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