SMTL ID : 8xl8.1

Structure of human 3-methylcrotonyl-CoA carboxylase in complex with propionyl-CoA (MCC-PCO)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-mer

Ligands

6 x BTN: BIOTIN(Covalent)

BTN.1: 11 residues within 4Å: Chain A: M.680, K.681 Chain D: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain J: L.246, A.250 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain J Hydrogen bonds: D:F.407, D:M.408, D:Q.477 Hydrophobic interactions: J:L.246 BTN.3: 11 residues within 4Å: Chain C: M.680, K.681 Chain F: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain L: L.246, A.250 4 PLIP interactions: 3 interactions with chain F, 1 interactions with chain L Hydrogen bonds: F:F.407, F:M.408, F:Q.477 Hydrophobic interactions: L:L.246 BTN.5: 11 residues within 4Å: Chain B: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain E: M.680, K.681 Chain H: L.246, A.250 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain H Hydrogen bonds: B:F.407, B:M.408, B:Q.477 Hydrophobic interactions: H:L.246 BTN.7: 11 residues within 4Å: Chain F: L.246, A.250 Chain G: M.680, K.681 Chain L: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 4 PLIP interactions: 3 interactions with chain L, 1 interactions with chain F Hydrogen bonds: L:F.407, L:M.408, L:Q.477 Hydrophobic interactions: F:L.246 BTN.9: 10 residues within 4Å: Chain B: L.246, A.250 Chain H: G.406, F.407, M.408, E.476, Q.477, N.480 Chain I: M.680, K.681 4 PLIP interactions: 3 interactions with chain H, 1 interactions with chain B Hydrogen bonds: H:F.407, H:M.408, H:Q.477 Hydrophobic interactions: B:L.246 BTN.11: 11 residues within 4Å: Chain D: L.246, A.250 Chain J: V.375, G.406, F.407, M.408, E.476, Q.477, N.480 Chain K: M.680, K.681 4 PLIP interactions: 3 interactions with chain J, 1 interactions with chain D Hydrogen bonds: J:F.407, J:M.408, J:Q.477 Hydrophobic interactions: D:L.246

6 x 1VU: propionyl Coenzyme A(Non-covalent)

1VU.2: 11 residues within 4Å: Chain B: K.141, G.142, G.174, A.176, L.178, A.218, G.219 Chain H: G.446, A.447, V.472, M.473 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.174, B:G.174, B:L.178 Salt bridges: B:K.141 1VU.4: 10 residues within 4Å: Chain D: R.78, K.141, G.142, G.174, A.176, L.178, T.217, A.218, G.219 Chain J: M.473 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.78, D:G.174, D:G.174, D:G.174, D:L.178 Salt bridges: D:K.141 1VU.6: 12 residues within 4Å: Chain F: K.141, G.142, A.144, G.174, A.176, Y.177, L.178, T.217, A.218, G.219 Chain L: V.472, M.473 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:R.78, F:G.174, F:G.174, F:G.174, F:L.178 Salt bridges: F:K.141 1VU.8: 14 residues within 4Å: Chain B: G.446, V.472, M.473 Chain H: R.78, K.141, G.142, A.144, G.174, A.176, Y.177, L.178, T.217, A.218, G.219 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:G.174, H:G.174, H:G.174, H:L.178 Salt bridges: H:R.78, H:K.141 1VU.10: 13 residues within 4Å: Chain D: V.472 Chain J: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, T.217, A.218, G.219 8 PLIP interactions: 7 interactions with chain J, 1 interactions with chain D Hydrogen bonds: J:R.78, J:G.174, J:G.174, J:G.174, J:L.178, J:G.220 Salt bridges: J:K.141 Hydrophobic interactions: D:V.472 1VU.12: 13 residues within 4Å: Chain F: V.472 Chain L: R.78, K.141, G.142, A.144, G.174, G.175, A.176, Y.177, L.178, T.217, A.218, G.219 6 PLIP interactions: 6 interactions with chain L Hydrogen bonds: L:G.174, L:G.174, L:G.174, L:L.178 Salt bridges: L:R.78, L:K.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, F. et al., Structural insights into human propionyl-CoA carboxylase (PCC) and 3-methylcrotonyl-CoA carboxylase (MCC). Elife (2024)

Release Date

2024-10-30

Peptides

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial: ACEGIK
Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

I
I

K
K

B
B

D
D

F
F

H
H

J
J

L
L

Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial

Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial

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