SMTL ID : 8xsf.1

SARS-CoV-2 RBD + IMCAS-364 + hACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.53, T.55, E.57, Q.340 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.53, A:N.53, A:T.55, A:E.57, A:E.57 NAG.2: 3 residues within 4Å: Chain A: K.26, N.90, T.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.26, A:N.90 NAG.3: 3 residues within 4Å: Chain A: N.322, M.323, W.328 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.322 NAG.5: 2 residues within 4Å: Chain B: N.25, L.50 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.50

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 3 residues within 4Å: Chain A: H.374, H.378, E.402 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.374, A:H.378, A:E.402, A:E.402

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tong, Z. et al., Deciphering a reliable synergistic bispecific strategy of rescuing antibodies for SARS-CoV-2 escape variants, including BA.2.86, EG.5.1, and JN.1. Cell Rep (2024)

Release Date

2024-07-17

Peptides

Angiotensin-converting enzyme 2: A
Spike protein S1: B
IMCAS-364 H chain: C
IMCAS-364 L chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Angiotensin-converting enzyme 2

Spike protein S1

IMCAS-364 H chain

IMCAS-364 L chain

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