SMTL ID : 8xx5.1

ASFV RNAP M1249L C-tail occupied complex1 (MCOC1)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.1173, C.1176, C.1191, N.1193, C.1194 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1173, A:C.1176, A:C.1191, A:C.1194 ZN.2: 4 residues within 4Å: Chain E: C.4, C.7, C.24, C.26 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.4, E:C.7, E:C.24, E:C.26 ZN.3: 4 residues within 4Å: Chain E: C.73, C.76, C.96, C.98 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:C.73, E:C.76, E:C.96, E:C.98 ZN.4: 5 residues within 4Å: Chain F: C.7, C.10, R.63, C.65, C.66 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.7, F:C.10, F:C.65, F:C.66 ZN.5: 4 residues within 4Å: Chain G: C.385, H.387, C.430, C.433 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.385, G:H.387, G:C.430, G:C.433 ZN.6: 4 residues within 4Å: Chain I: C.59, C.62, C.69, H.72 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.59, I:C.62, I:C.69, I:H.72 ZN.7: 4 residues within 4Å: Chain I: C.99, C.102, C.134, C.137 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:C.99, I:C.102, I:C.134, I:C.137

1 x MG: MAGNESIUM ION(Non-covalent)

MG.8: 3 residues within 4Å: Chain I: D.457, D.459, D.461 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:D.457, I:D.459, I:D.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, G. et al., Structural basis of RNA polymerase complexes in African swine fever virus. Nat Commun (2025)

Release Date

2025-01-22

Peptides

DNA-directed RNA polymerase subunit beta: A
DNA-directed RNA polymerase RPB3-11 homolog: B
DNA-directed RNA polymerase RPB5 homolog: C
D339L: D
C122R: E
DNA-directed RNA polymerase RPB10 homolog: F
M1249L: G
C147L: H
DNA-directed RNA polymerase subunit: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
D

D
F

E
G

F
H

G
I

H
E

I
A

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase RPB3-11 homolog

DNA-directed RNA polymerase RPB5 homolog

D339L

C122R

DNA-directed RNA polymerase RPB10 homolog

M1249L

C147L

DNA-directed RNA polymerase subunit

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