SMTL ID : 8xxt.1

ASFV RNAP M1249L C-tail occupied complex2 (MCOC2)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-mer

Ligands

7 x ZN: ZINC ION(Non-covalent)(Non-functional Binders)

ZN.1: 4 residues within 4Å: Chain A: C.59, C.62, C.69, H.72 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.59, A:C.62, A:C.69, A:H.72 ZN.2: 4 residues within 4Å: Chain A: C.99, C.102, C.134, C.137 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.99, A:C.102, A:C.134, A:C.137 ZN.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) ZN.5: 4 residues within 4Å: Chain B: C.1173, C.1176, C.1191, C.1194 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1173, B:C.1176, B:C.1191, B:C.1194 ZN.6: 4 residues within 4Å: Chain G: C.4, C.7, C.24, C.26 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:C.4, G:C.24, G:C.26 ZN.7: 4 residues within 4Å: Chain G: C.73, C.76, C.96, C.98 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:C.73, G:C.76, G:C.96, G:C.98 ZN.8: 5 residues within 4Å: Chain H: C.7, C.10, R.63, C.65, C.66 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.7, H:C.10, H:C.65, H:C.66

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: D.457, D.459, D.461 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.457, A:D.459, A:D.459, A:D.461, A:D.461

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, G. et al., Structural basis of RNA polymerase complexes in African swine fever virus. Nat Commun (2025)

Release Date

2025-01-22

Peptides

DNA-directed RNA polymerase subunit: A
DNA-directed RNA polymerase subunit beta: B
DNA-directed RNA polymerase RPB3-11 homolog: C
DNA-directed RNA polymerase RPB5 homolog: D
C147L: E
D339L: F
C122R: G
DNA-directed RNA polymerase RPB10 homolog: H
M1249L: I

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

DNA-directed RNA polymerase subunit

DNA-directed RNA polymerase subunit beta

DNA-directed RNA polymerase RPB3-11 homolog

DNA-directed RNA polymerase RPB5 homolog

C147L

D339L

C122R

DNA-directed RNA polymerase RPB10 homolog

M1249L

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