SMTL ID : 8y8z.1

Structure of NET-Maprotiline in outward-open state

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x 01: ~{N}-methyl-3-(1-tetracyclo[6.6.2.0^{2,7}.0^{9,14}]hexadeca-2(7),3,5,9,11,13-hexaenyl)propan-1-amine

01.1: 15 residues within 4Å: Chain A: F.72, A.73, D.75, A.145, V.148, G.149, Y.152, F.317, S.318, L.319, G.320, F.323, V.325, S.419, S.420 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.148, A:V.148, A:Y.152, A:Y.152, A:Y.152, A:F.323, A:F.323, A:F.323, A:V.325 01.4: 15 residues within 4Å: Chain B: F.72, D.75, I.144, A.145, V.148, G.149, Y.152, F.317, S.318, G.320, F.323, V.325, S.419, S.420, G.423 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:V.148, B:Y.152, B:F.323, B:F.323, B:F.323, B:V.325 Hydrogen bonds: B:F.317

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: G.71, V.74, D.75, L.415, D.418, S.419 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.72 NA.5: 6 residues within 4Å: Chain B: G.71, F.72, V.74, L.415, D.418, S.419 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.418

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: Y.98, Q.314, S.318, N.350, S.354 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain B: Y.98, Q.314, S.318, N.350, S.354 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, H. et al., Dimerization and antidepressant recognition at noradrenaline transporter. Nature (2024)

Release Date

2024-05-29

Peptides

Sodium-dependent noradrenaline transporter: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

Membrane

We predict this structure to be a membrane protein.
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Sodium-dependent noradrenaline transporter

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