SMTL ID : 8yd3.2 (4 other biounits)

Crystal structure of human Cu-Zn Superoxide Dismutase 1 in complex with 1,2,10-Decanetriol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.64, H.72, H.81, D.84, K.137 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.64, A:H.72, A:H.81, A:D.84, A:D.84 ZN.4: 5 residues within 4Å: Chain B: H.64, H.72, H.81, D.84, K.137 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.64, B:H.72, B:H.81, B:D.84, B:D.84

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.49, H.64, H.121, T.138, G.142, R.144 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.64, A:R.144 Water bridges: A:T.138, A:R.144 GOL.5: 6 residues within 4Å: Chain B: H.49, H.121, T.138, G.142, S.143, R.144 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.144, B:R.144 Water bridges: B:H.49, B:H.64, B:R.144

1 x 01: (2S)-decane-1,2,10-triol

01.3: 10 residues within 4Å: Chain A: V.8, K.10, Q.16, G.17, I.18, K.37 Chain B: N.54, T.55, A.56, G.57 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.8 Hydrogen bonds: A:Q.16, A:K.37 Water bridges: A:S.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aouti, S. et al., Crystal structure of human Cu-Zn Superoxide Dismutase 1 in complex with 1,2,10-Decanetriol. To Be Published

Release Date

2024-08-21

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Superoxide dismutase [Cu-Zn]

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