SMTL ID : 8yd3.3 (4 other biounits)

Crystal structure of human Cu-Zn Superoxide Dismutase 1 in complex with 1,2,10-Decanetriol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.64, H.72, H.81, D.84, K.137 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.64, A:H.72, A:H.81, A:D.84, A:D.84 ZN.2: 5 residues within 4Å: Chain B: H.64, H.72, H.81, D.84, K.137 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.64, B:H.72, B:H.81, B:D.84

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain B: H.49, H.121, T.138, G.142, R.144 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.64, B:R.144 Water bridges: B:H.47, B:R.144

1 x 01: (2S)-decane-1,2,10-triol

01.4: 5 residues within 4Å: Chain B: L.43, N.87, A.124, D.125, L.127 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:L.43, B:A.124, B:L.127 Hydrogen bonds: B:N.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aouti, S. et al., Crystal structure of human Cu-Zn Superoxide Dismutase 1 in complex with 1,2,10-Decanetriol. To Be Published

Release Date

2024-08-21

Peptides

Superoxide dismutase [Cu-Zn]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

Superoxide dismutase [Cu-Zn]

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