SMTL ID : 8yg7.1 (1 other biounit)

HSA Copper Indomethacin Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x 01: ~{N},~{N}-dimethyl-7-propan-2-yl-3-thia-5-aza-1,6-diazonia-2$l^{3}-cupratricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine

01.1: 9 residues within 4Å: Chain A: L.113, I.140, R.143, H.144, F.147, L.152, Y.159, R.184, G.187 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:I.140, A:F.147, A:L.152, A:R.184 Metal complexes: A:H.144, 01.1

1 x IMN: INDOMETHACIN(Non-covalent)

IMN.2: 13 residues within 4Å: Chain A: K.197, F.209, L.217, R.220, L.236, V.239, H.240, R.255, L.258, A.259, I.262, I.288, A.289 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.197, A:F.209, A:L.236, A:L.236, A:H.240, A:R.255, A:L.258 Hydrogen bonds: A:A.289 Salt bridges: A:R.220

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.3: 5 residues within 4Å: Chain A: R.115, Y.136, L.137, A.156, Y.159 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.136, A:Y.136, A:Y.136, A:A.156, A:Y.159, A:Y.159 Water bridges: A:R.115, A:R.115 Salt bridges: A:R.115 PLM.4: 13 residues within 4Å: Chain A: V.21, V.44, L.64, L.67, Y.148, P.150, L.248, L.249, A.252, R.255, L.281, L.282, S.285 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.21, A:V.44, A:L.64, A:L.67, A:P.150, A:L.248, A:A.252, A:L.282 Hydrogen bonds: A:Y.148, A:S.285 Water bridges: A:R.255, A:S.285, A:H.286 Salt bridges: A:R.255 PLM.5: 14 residues within 4Å: Chain A: S.340, V.342, R.346, P.382, L.385, I.386, N.389, C.390, Y.409, L.428, C.436, L.451, R.483 Ligands: PLM.6 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.385, A:I.386, A:I.386, A:L.428 Hydrogen bonds: A:S.340 Salt bridges: A:R.346, A:R.483 PLM.6: 12 residues within 4Å: Chain A: L.385, Y.409, V.416, T.420, L.421, V.424, L.458, H.462, V.471, F.486, S.487 Ligands: PLM.5 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.409, A:Y.409, A:Y.409, A:Y.409, A:L.421, A:V.424, A:L.458, A:H.462, A:V.471, A:F.486, A:F.486 Hydrogen bonds: A:Y.409, A:S.487 PLM.7: 12 residues within 4Å: Chain A: Y.399, N.403, F.500, F.505, K.523, L.530, H.533, V.545, F.549, A.550, S.577, Q.578 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.500, A:L.530, A:V.545, A:F.549, A:F.549, A:Q.578 Salt bridges: A:K.523 PLM.8: 7 residues within 4Å: Chain A: R.207, K.210, A.211, S.230, D.322, L.345, K.349 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.207, A:K.210, A:A.211, A:L.345 Water bridges: A:R.207 Salt bridges: A:R.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Man, X.Y. et al., Human serum albumin-copper(II) agent-Indomethacin complex. To Be Published

Release Date

2025-03-12

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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