SMTL ID : 8yg7.2 (1 other biounit)

HSA Copper Indomethacin Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x 01: ~{N},~{N}-dimethyl-7-propan-2-yl-3-thia-5-aza-1,6-diazonia-2$l^{3}-cupratricyclo[6.4.0.0^{2,6}]dodeca-1(12),4,6,8,10-pentaen-4-amine

01.1: 10 residues within 4Å: Chain A: L.113, I.140, R.143, H.144, F.147, F.155, Y.159, R.184, G.187 Ligands: PLM.3 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:I.140, A:F.147, A:F.155, A:R.184 pi-Stacking: A:H.144 Metal complexes: A:H.144, 01.1

1 x IMN: INDOMETHACIN(Non-covalent)

IMN.2: 10 residues within 4Å: Chain A: L.196, K.197, S.200, L.201, A.208, F.209, W.212, R.216, R.220, S.452 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.209, A:W.212, A:W.212, A:R.216 pi-Stacking: A:W.212, A:W.212, A:W.212

6 x PLM: PALMITIC ACID(Non-covalent)

PLM.3: 10 residues within 4Å: Chain A: R.115, M.121, L.133, Y.136, A.156, Y.159, F.163, L.180, R.184 Ligands: 01.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.115, A:Y.136, A:Y.136, A:A.156, A:Y.159, A:Y.159, A:Y.159, A:F.163 Salt bridges: A:R.115, A:R.184 PLM.4: 11 residues within 4Å: Chain A: L.20, V.21, V.44, L.64, Y.148, L.248, L.249, A.252, R.255, L.282, S.285 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.20, A:V.44, A:L.64, A:L.248, A:L.249, A:A.252, A:L.282 Hydrogen bonds: A:Y.148, A:Y.148, A:S.285 Water bridges: A:S.285, A:H.286 Salt bridges: A:R.255 PLM.5: 15 residues within 4Å: Chain A: S.340, V.342, R.346, P.382, L.385, I.386, N.389, R.408, Y.409, L.428, C.435, A.447, L.451, R.483 Ligands: PLM.6 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.382, A:L.385, A:I.386, A:A.447, A:L.451 Hydrogen bonds: A:S.340 Salt bridges: A:R.346, A:R.483 PLM.6: 14 residues within 4Å: Chain A: L.385, R.408, Y.409, V.416, T.420, V.424, L.428, L.455, L.458, H.462, V.471, F.486, S.487 Ligands: PLM.5 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.409, A:Y.409, A:Y.409, A:V.416, A:L.428, A:L.455, A:L.458, A:L.458, A:H.462, A:V.471, A:F.486 Hydrogen bonds: A:S.487 Salt bridges: A:R.408, A:K.412 PLM.7: 13 residues within 4Å: Chain A: Y.399, N.403, F.500, F.505, K.523, A.526, H.533, V.545, M.546, F.549, A.550, S.577, Q.578 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.500, A:F.505, A:F.505, A:K.523, A:A.526, A:V.545, A:F.549, A:F.549, A:Q.578 Hydrogen bonds: A:Y.399, A:M.546 Salt bridges: A:K.523 PLM.8: 6 residues within 4Å: Chain A: K.210, A.211, V.214, D.322, G.326, K.349 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.210, A:A.211, A:V.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Man, X.Y. et al., Human serum albumin-copper(II) agent-Indomethacin complex. To Be Published

Release Date

2025-03-12

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

Albumin

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