- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 2 x 41U: nisoxetine(Non-covalent)
- 2 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)
PIO.2: 6 residues within 4Å:- Chain A: Y.249, W.253, K.443, L.444, F.447
- Ligands: CLR.11
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.444, A:F.447
- Hydrogen bonds: A:Y.249, A:K.443
- Salt bridges: A:K.443
PIO.20: 6 residues within 4Å:- Chain B: Y.249, F.250, W.253, K.443, L.444, F.447
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:K.443, B:F.447
- Hydrogen bonds: B:Y.249, B:K.443
- Salt bridges: B:K.443
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 6 residues within 4Å:- Chain A: A.73, V.74, D.75, N.78, S.318, N.350
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.75, A:N.78, A:S.318, A:N.350
NA.4: 5 residues within 4Å:- Chain A: G.71, V.74, L.415, D.418, S.419
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.415
NA.21: 6 residues within 4Å:- Chain B: A.73, V.74, D.75, N.78, S.318, N.350
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.75, B:N.78, B:S.318, B:N.350
NA.22: 5 residues within 4Å:- Chain B: G.71, V.74, L.415, D.418, S.419
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.419, B:S.419
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 20 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
CLR.6: 8 residues within 4Å:- Chain A: L.438, H.441, L.444, G.448, F.451
- Ligands: CLR.8, CLR.11, CLR.25
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.438, A:L.444, A:L.444, A:F.451
CLR.7: 4 residues within 4Å:- Chain B: L.444
- Ligands: CLR.8, 01.13, CLR.24
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.444
CLR.8: 11 residues within 4Å:- Chain A: L.431, F.435, V.437, L.438, V.449, S.452
- Ligands: CLR.6, CLR.7, 01.13, CLR.24, CLR.25
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.431, A:F.435, A:F.435, A:F.435, A:L.438, A:L.438, A:V.449
CLR.9: 12 residues within 4Å:- Chain A: Y.147, I.227, H.228, I.230, L.456, F.459, V.468, L.472, W.553
- Ligands: CLR.10, 01.13, CLR.26
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:Y.147, A:I.230, A:F.459, A:V.468, A:V.468, A:L.472, A:W.553
CLR.10: 10 residues within 4Å:- Chain A: Y.147, W.556, V.557, G.560, I.561, S.564
- Ligands: CLR.9, 01.13, CLR.26, 01.30
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.556, A:V.557, A:V.557
CLR.11: 5 residues within 4Å:- Chain A: L.444
- Ligands: PIO.2, CLR.6, CLR.25, 01.29
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:L.444
CLR.12: 9 residues within 4Å:- Chain A: P.233, W.235, L.238, F.451, L.455
- Chain B: W.553
- Ligands: 01.14, CLR.27, CLR.28
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:W.235, A:L.238, A:F.451, A:L.455, B:W.553
CLR.15: 6 residues within 4Å:- Chain A: I.63, W.264, T.268, Y.271, F.272
- Ligands: CLR.16
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.264, A:F.272, A:F.272
CLR.16: 6 residues within 4Å:- Chain A: W.264, T.268, L.269, F.272, V.407
- Ligands: CLR.15
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:W.264, A:W.264, A:T.268, A:L.269, A:F.272, A:V.407
CLR.17: 8 residues within 4Å:- Chain A: T.99, L.102, I.103, M.107, Y.340, L.344, S.348, C.351
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:L.102, A:I.103, A:L.344
CLR.18: 9 residues within 4Å:- Chain A: F.483, I.537, F.540, W.556, W.559, L.563, M.566, V.567, P.570
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:F.483, A:I.537, A:I.537, A:F.540, A:W.556, A:W.559, A:W.559, A:W.559, A:W.559, A:W.559, A:L.563, A:M.566, A:V.567, A:P.570
CLR.24: 9 residues within 4Å:- Chain B: V.437, L.438, H.441, L.444, G.448, F.451
- Ligands: CLR.7, CLR.8, CLR.25
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.438, B:L.444, B:F.451
CLR.25: 11 residues within 4Å:- Chain B: L.431, F.435, V.437, L.438, V.449, S.452
- Ligands: CLR.6, CLR.8, CLR.11, CLR.24, 01.29
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:L.431, B:F.435, B:F.435, B:F.435, B:V.437, B:L.438, B:L.438, B:V.449
CLR.26: 7 residues within 4Å:- Chain A: W.553
- Chain B: P.233, L.238, L.455
- Ligands: CLR.9, CLR.10, 01.30
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:W.553, B:L.238, B:L.455
CLR.27: 10 residues within 4Å:- Chain B: L.143, Y.147, I.227, I.230, L.456, V.468, L.472, W.553
- Ligands: CLR.12, CLR.28
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:L.143, B:Y.147, B:I.230, B:L.472, B:W.553, B:W.553
CLR.28: 9 residues within 4Å:- Chain B: Y.147, W.556, V.557, G.560, I.561, S.564
- Ligands: CLR.12, 01.14, CLR.27
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.557, B:V.557, B:I.561
CLR.31: 9 residues within 4Å:- Chain B: F.483, I.537, F.540, W.556, W.559, L.563, M.566, V.567, P.570
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:F.483, B:I.537, B:I.537, B:F.540, B:W.559, B:W.559, B:W.559, B:W.559, B:W.559, B:W.559, B:L.563, B:M.566, B:V.567, B:P.570
CLR.32: 6 residues within 4Å:- Chain B: I.63, W.264, T.268, Y.271, F.272
- Ligands: CLR.34
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.63, B:W.264, B:T.268, B:F.272
CLR.33: 8 residues within 4Å:- Chain B: T.99, I.103, M.107, Y.340, L.344, S.348, C.351, I.352
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:I.103, B:I.103, B:L.344
- Hydrogen bonds: B:Y.340
CLR.34: 6 residues within 4Å:- Chain B: W.264, T.268, L.269, F.272, V.407
- Ligands: CLR.32
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:W.264, B:T.268, B:L.269, B:F.272, B:F.272, B:F.272, B:V.407
- 4 x 01: [(2R)-2-octanoyloxy-3-[oxidanyl-[(2R,3R,5S,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
01.13: 12 residues within 4Å:- Chain A: K.135, Y.139, D.434, F.435, S.564, L.568, Y.572, Y.575
- Ligands: CLR.7, CLR.8, CLR.9, CLR.10
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.139, A:L.568
- Hydrogen bonds: A:Y.139, A:Y.572
01.14: 6 residues within 4Å:- Chain A: W.235, L.238, L.239, M.242
- Ligands: CLR.12, CLR.28
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.238, A:L.239
01.29: 10 residues within 4Å:- Chain B: Y.139, L.143, D.434, F.435, L.568, I.571, Y.572, Y.575
- Ligands: CLR.11, CLR.25
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:Y.139, B:Y.139, B:L.143, B:L.568, B:L.568, B:I.571
- Hydrogen bonds: B:Y.139, B:D.434, B:D.434, B:Y.572, B:Y.575, B:Y.575
01.30: 6 residues within 4Å:- Chain B: W.235, L.238, L.239, M.242
- Ligands: CLR.10, CLR.26
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:L.238, B:L.239
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, H. et al., Dimerization and antidepressant recognition at noradrenaline transporter. Nature (2024)
- Release Date
- 2024-05-29
- Peptides
- Sodium-dependent noradrenaline transporter: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 2 x 41U: nisoxetine(Non-covalent)
- 2 x PIO: [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 20 x CLR: CHOLESTEROL(Non-covalent)(Covalent)
- 4 x 01: [(2R)-2-octanoyloxy-3-[oxidanyl-[(2R,3R,5S,6R)-2,3,4,5,6-pentakis(oxidanyl)cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, H. et al., Dimerization and antidepressant recognition at noradrenaline transporter. Nature (2024)
- Release Date
- 2024-05-29
- Peptides
- Sodium-dependent noradrenaline transporter: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
A - Membrane
-
We predict this structure to be a membrane protein.