SMTL ID : 8z13.1

Crystal structure of DiatB-NADPH complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 21 residues within 4Å: Chain A: Y.51, L.54, H.55, L.56, N.57, H.143, P.149, V.183, L.185, G.186, A.187, S.188, D.191, R.208, R.209, L.211, C.317, T.318, G.319, R.360 Ligands: FAD.2 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.54, A:A.187 Hydrogen bonds: A:H.55, A:N.57, A:N.57, A:H.143, A:D.150, A:D.150, A:L.185, A:S.188, A:S.188, A:R.208, A:R.208, A:R.360 Water bridges: A:K.216 Salt bridges: A:R.208 pi-Cation interactions: A:R.208, A:R.208

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 29 residues within 4Å: Chain A: I.6, G.7, G.9, L.10, S.11, L.29, E.30, K.31, G.37, I.38, W.39, P.49, L.54, H.55, L.56, N.57, T.58, T.63, T.104, E.105, V.106, A.139, S.140, G.141, H.143, F.326, A.364, I.365 Ligands: NAP.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.38, A:L.54, A:H.143 Hydrogen bonds: A:S.11, A:S.11, A:S.11, A:K.31, A:I.38, A:W.39, A:N.57, A:T.58, A:V.106, A:V.106, A:H.143, A:I.365 Water bridges: A:L.10, A:L.10 pi-Stacking: A:W.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, M. et al., Bacterial Biosynthesis of Nitrile-Containing Natural Products: Basis for Recognition of Diversified Substrates. Acs Catalysis (2024)

Release Date

2025-02-19

Peptides

Flavin-dependent monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin-dependent monooxygenase

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