SMTL ID : 8z15.1

Crystal structure of DiatB-NADP-6-DMAIAOx complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: G.7, G.9, L.10, S.11, L.29, E.30, K.31, G.37, I.38, W.39, P.49, G.50, H.55, L.56, N.57, T.58, T.63, T.104, E.105, V.106, A.139, S.140, G.141, H.143, F.326, A.364 Ligands: NAP.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.38, A:H.143 Hydrogen bonds: A:L.10, A:S.11, A:S.11, A:S.11, A:K.31, A:G.37, A:I.38, A:W.39, A:N.57, A:T.58, A:V.106, A:V.106, A:H.143, A:I.365

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 21 residues within 4Å: Chain A: Y.51, L.54, H.55, N.57, H.143, P.149, V.183, G.184, L.185, G.186, A.187, S.188, D.191, R.208, R.209, L.211, C.317, T.318, G.319 Ligands: FAD.1, 01.3 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.54, A:A.187 Hydrogen bonds: A:H.55, A:N.57, A:L.185, A:A.187, A:S.188, A:S.188 Water bridges: A:F.320 Salt bridges: A:R.208 pi-Cation interactions: A:R.208

1 x 01: (~{N}~{Z})-~{N}-[2-[6-(3-methylbut-2-enyl)-1~{H}-indol-3-yl]ethylidene]hydroxylamine

01.3: 7 residues within 4Å: Chain A: V.223, I.226, T.272, L.274, R.360, V.362 Ligands: NAP.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.223, A:V.223, A:I.226, A:T.272, A:V.362 Hydrogen bonds: A:R.360

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, M. et al., Bacterial Biosynthesis of Nitrile-Containing Natural Products: Basis for Recognition of Diversified Substrates. Acs Catalysis (2024)

Release Date

2025-02-19

Peptides

Flavin-dependent monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin-dependent monooxygenase

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