SMTL ID : 8z14.1

The crystal structure of DiatB-6-DMAT complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x 01: (2~{S})-2-azanyl-3-[6-(3-methylbut-2-enyl)-1~{H}-indol-3-yl]propanoic acid

01.1: 11 residues within 4Å: Chain A: N.57, T.58, V.223, D.224, F.268, L.274, R.360, P.361, V.362, G.363 Ligands: FAD.2 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.223, A:V.223, A:D.224, A:F.268, A:L.274, A:V.362 Hydrogen bonds: A:N.57, A:N.57, A:G.363 Salt bridges: A:R.360

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 26 residues within 4Å: Chain A: I.6, G.7, G.9, L.10, S.11, L.29, E.30, K.31, G.37, I.38, W.39, P.49, L.54, L.56, N.57, T.58, E.105, V.106, A.139, S.140, G.141, H.143, F.326, A.364, I.365 Ligands: 01.1 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:I.38, A:P.49, A:L.54 Hydrogen bonds: A:G.9, A:L.10, A:S.11, A:S.11, A:K.31, A:G.37, A:I.38, A:W.39, A:N.57, A:T.58, A:T.58, A:V.106, A:V.106, A:H.143, A:I.365 Water bridges: A:S.11, A:E.30, A:G.141, A:H.142 pi-Stacking: A:W.39 pi-Cation interactions: A:K.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, M. et al., Bacterial Biosynthesis of Nitrile-Containing Natural Products: Basis for Recognition of Diversified Substrates. Acs Catalysis (2024)

Release Date

2025-02-19

Peptides

Flavin-dependent monooxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Flavin-dependent monooxygenase

Related Entries With Identical Sequence