SMTL ID : 8zes.2 (4 other biounits)

Crystal structure of the Wuhan SARS-CoV-2 RBD (333-541) complexed with P2C5 nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 2 residues within 4Å: Chain A: G.7, N.11 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.7

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sluchanko, N.N. et al., Structural Basis for Evasion of New SARS-CoV-2 Variants from the Potent Virus-Neutralizing Nanobody Targeting the S-Protein Receptor-Binding Domain. Biochemistry Mosc. (2024)

Release Date

2024-09-04

Peptides

Spike protein S1: A
Nanobody P2C5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Nanobody P2C5

Related Entries With Identical Sequence