SMTL ID : 8zes.3 (4 other biounits)

Crystal structure of the Wuhan SARS-CoV-2 RBD (333-541) complexed with P2C5 nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG.1: 3 residues within 4Å: Chain B: G.7, F.10, N.11 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.10 Hydrogen bonds: B:N.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sluchanko, N.N. et al., Structural Basis for Evasion of New SARS-CoV-2 Variants from the Potent Virus-Neutralizing Nanobody Targeting the S-Protein Receptor-Binding Domain. Biochemistry Mosc. (2024)

Release Date

2024-09-04

Peptides

Nanobody P2C5: A
Spike protein S1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
D

Nanobody P2C5

Spike protein S1

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