SMTL ID : 8zes.5 (4 other biounits)

Crystal structure of the Wuhan SARS-CoV-2 RBD (333-541) complexed with P2C5 nanobody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG.1: 3 residues within 4Å: Chain A: G.7, N.11, F.42 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sluchanko, N.N. et al., Structural Basis for Evasion of New SARS-CoV-2 Variants from the Potent Virus-Neutralizing Nanobody Targeting the S-Protein Receptor-Binding Domain. Biochemistry Mosc. (2024)

Release Date

2024-09-04

Peptides

Spike protein S1: A
Nanobody P2C5: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
I

B
J

Spike protein S1

Nanobody P2C5

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