SMTL ID : 8zmb.1 (2 other biounits)

Crystal Structure of the first bromodomain of human BRD4 BD1 in complex with the inhibitor Y13195

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x 01: 7-(2-(4-fluoro-2,6-dimethylphenoxy)-5-(2-hydroxypropan-2-yl)phenyl)-5-methyl-2-(2-phenyl-1H-imidazol-5-yl)furo[3,2-c]pyridin-4(5H)-one

01.1: 13 residues within 4Å: Chain A: W.54, P.55, F.56, Q.58, P.59, V.60, D.61, L.65, L.67, N.113, I.119, M.122 Ligands: DMS.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.54, A:W.54, A:L.65, A:L.65, A:I.119 Hydrogen bonds: A:Q.58, A:D.61, A:N.113

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 3 residues within 4Å: Chain A: D.118, I.119 Ligands: 01.1 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:D.117

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: I.73, I.74, K.75, T.76, N.108, I.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.75, A:T.76, A:T.76, A:T.76 PO4.4: 2 residues within 4Å: Chain A: R.41, K.45 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.41, A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Discovery of the First BRD4 Second Bromodomain (BD2)-Selective Inhibitors. J.Med.Chem. (2024)

Release Date

2024-12-11

Peptides

BRD4_HUMAN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BRD4_HUMAN

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