SMTL ID : 8zmb.2 (2 other biounits)

Crystal Structure of the first bromodomain of human BRD4 BD1 in complex with the inhibitor Y13195

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

1 x 01: 7-(2-(4-fluoro-2,6-dimethylphenoxy)-5-(2-hydroxypropan-2-yl)phenyl)-5-methyl-2-(2-phenyl-1H-imidazol-5-yl)furo[3,2-c]pyridin-4(5H)-one

01.1: 13 residues within 4Å: Chain A: W.54, P.55, F.56, Q.58, P.59, V.60, D.61, L.65, L.67, N.113, I.119, M.122 Ligands: DMS.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.54, A:W.54, A:L.65, A:L.65, A:L.67, A:I.119 Hydrogen bonds: A:D.61, A:N.113

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 2 residues within 4Å: Chain A: D.118 Ligands: 01.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:D.117, A:D.118 DMS.3: 2 residues within 4Å: Chain A: K.45, K.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.45 pi-Cation interactions: A:W.48

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: R.41, K.45 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.41, A:K.45

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, J. et al., Discovery of the First BRD4 Second Bromodomain (BD2)-Selective Inhibitors. J.Med.Chem. (2024)

Release Date

2024-12-11

Peptides

BRD4_HUMAN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

BRD4_HUMAN

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