SMTL ID : 9bkz.1 (1 other biounit)

Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (CoA and ADP bound)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 10 residues within 4Å: Chain A: G.18, G.20, S.21, G.22, K.23, S.24, T.25, R.148, R.152, N.183 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.20, A:S.21, A:G.22, A:K.23, A:S.24, A:T.25, A:T.25, A:R.148, A:R.152, A:N.183, A:G.185 Salt bridges: A:K.23, A:R.152 pi-Cation interactions: A:R.148, A:R.148

1 x COA: COENZYME A(Non-covalent)

COA.2: 7 residues within 4Å: Chain A: N.68, D.69, L.73, N.74, R.75, R.76, R.77 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:N.68, A:D.69, A:L.73, A:N.74, A:R.75, A:R.76, A:R.77, A:R.77 Salt bridges: A:R.76

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 1 residues within 4Å: Chain A: R.79 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.79 Hydrogen bonds: A:R.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (CoA and ADP bound). To be published

Release Date

2024-05-08

Peptides

Dephospho-CoA kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dephospho-CoA kinase

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