- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 5 x BZI: BENZIMIDAZOLE(Non-covalent)
BZI.2: 14 residues within 4Å:- Chain A: F.37, L.49, T.50, R.101, F.132, D.133, T.134, V.389, I.391, L.395, R.414, F.459
- Chain B: Y.72
- Ligands: 0JO.4
11 PLIP interactions:10 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.37, A:F.37, A:F.132, A:V.389, A:L.395, A:F.459, B:Y.72
- Hydrogen bonds: A:R.101, A:D.133
- Water bridges: A:R.101
- pi-Stacking: A:F.459
BZI.5: 3 residues within 4Å:- Chain A: Y.160, R.340, Y.348
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:Y.160, A:Y.160, A:Y.348
- Hydrogen bonds: A:Y.348
- Water bridges: A:R.340
- pi-Stacking: A:Y.160
BZI.8: 15 residues within 4Å:- Chain A: Y.72
- Chain B: F.37, L.49, T.50, R.101, F.132, D.133, T.134, V.389, I.391, L.395, R.414, H.458, F.459
- Ligands: 0JO.9
8 PLIP interactions:2 interactions with chain A, 6 interactions with chain B- Hydrophobic interactions: A:Y.72, B:F.37, B:V.389
- Hydrogen bonds: A:Y.72, B:D.133, B:D.133
- Water bridges: B:R.101
- pi-Stacking: B:F.459
BZI.11: 15 residues within 4Å:- Chain C: F.37, L.49, T.50, R.101, F.132, D.133, T.134, V.389, I.391, L.395, R.414, H.458, F.459
- Chain D: Y.72
- Ligands: 0JO.12
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:F.37, C:F.132, C:V.389
- Hydrogen bonds: C:D.133
- Water bridges: C:R.101
- pi-Stacking: C:F.459
BZI.14: 15 residues within 4Å:- Chain C: Y.72
- Chain D: F.37, L.49, T.50, R.101, F.132, D.133, T.134, V.389, I.391, L.395, R.414, H.458, F.459
- Ligands: 0JO.15
6 PLIP interactions:5 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:F.37, D:V.389, C:Y.72
- Hydrogen bonds: D:R.101, D:D.133
- pi-Stacking: D:F.459
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
0JO.4: 20 residues within 4Å:- Chain A: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, A.225, R.226, S.263, K.265, K.266, R.414
- Chain B: Y.72
- Ligands: BZI.2
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:F.132, A:F.132, A:T.190
- Hydrogen bonds: A:T.50, A:Q.99, A:G.100, A:R.101, A:N.194, A:R.226, A:R.226, A:S.263, A:K.266
- Water bridges: A:S.52, A:A.225
- Salt bridges: A:R.101, A:R.226, A:K.265, A:K.266, A:K.266, A:R.414
0JO.9: 20 residues within 4Å:- Chain A: Y.72
- Chain B: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, A.225, R.226, S.263, K.265, K.266, R.414
- Ligands: BZI.8
23 PLIP interactions:23 interactions with chain B- Hydrophobic interactions: B:F.132, B:F.132, B:F.132, B:T.190
- Hydrogen bonds: B:T.50, B:S.52, B:S.52, B:Q.99, B:G.100, B:R.101, B:N.194, B:R.226, B:R.226, B:S.263, B:K.266
- Water bridges: B:A.225, B:K.265
- Salt bridges: B:R.101, B:R.226, B:K.265, B:K.266, B:K.266, B:R.414
0JO.12: 20 residues within 4Å:- Chain C: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, A.225, R.226, S.263, K.265, K.266, R.414
- Chain D: Y.72
- Ligands: BZI.11
21 PLIP interactions:21 interactions with chain C- Hydrophobic interactions: C:F.132, C:F.132, C:T.190
- Hydrogen bonds: C:T.50, C:S.52, C:Q.99, C:G.100, C:R.101, C:N.194, C:R.226, C:R.226, C:S.263, C:K.266
- Water bridges: C:A.225, C:K.265
- Salt bridges: C:R.101, C:R.226, C:K.265, C:K.266, C:K.266, C:R.414
0JO.15: 20 residues within 4Å:- Chain C: Y.72
- Chain D: T.50, S.52, Q.99, G.100, R.101, E.104, F.132, T.134, T.135, T.190, N.194, D.223, A.225, R.226, S.263, K.265, K.266, R.414
- Ligands: BZI.14
22 PLIP interactions:22 interactions with chain D- Hydrophobic interactions: D:F.132, D:F.132, D:T.190
- Hydrogen bonds: D:T.50, D:T.50, D:S.52, D:Q.99, D:G.100, D:R.101, D:N.194, D:R.226, D:R.226, D:S.263, D:K.266
- Water bridges: D:S.52, D:A.225
- Salt bridges: D:R.101, D:R.226, D:K.265, D:K.266, D:K.266, D:R.414
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S., Proteus vulgaris tryptophan indole-lyase aminoacrylate complex with benzimidazole. To Be Published
- Release Date
- 2024-05-29
- Peptides
- Tryptophanase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.51 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x K: POTASSIUM ION(Non-covalent)
- 5 x BZI: BENZIMIDAZOLE(Non-covalent)
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 4 x 0JO: 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Phillips, R.S., Proteus vulgaris tryptophan indole-lyase aminoacrylate complex with benzimidazole. To Be Published
- Release Date
- 2024-05-29
- Peptides
- Tryptophanase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D