SMTL ID : 9cf7.1

Germline-targeting HIV-1 gp120 engineered outer domain eODgt8 in complex with Fab eOD-PL01.1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.55 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 9 residues within 4Å: Chain A: H.17, C.18, S.19, S.20, N.21, V.60, N.68, C.154 Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.60 NAG.2: 3 residues within 4Å: Chain A: N.21, E.99 Ligands: NAG.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiffner, T. et al., Diverse competitor B cell responses to a germline-targeting priming immunogen in human Ig loci transgenic mice. To Be Published

Release Date

2025-06-25

Peptides

Germline-targeting HIV-1 gp120 engineered outer domain eODgt8: A
Fab eOD-PL01.1 heavy chain: B
Fab eOD-PL01.1 kappa light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

Germline-targeting HIV-1 gp120 engineered outer domain eODgt8

Fab eOD-PL01.1 heavy chain

Fab eOD-PL01.1 kappa light chain

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