SMTL ID : 9oap.1

Crystal structure of antibody Fab G001-58 from IAVI G001 human trial in complex with a germline-targeting gp120 engineered outer domain eOD-GT8-mingly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain C: S.19, S.20, N.21, E.99 Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:E.99 NAG.2: 7 residues within 4Å: Chain C: H.17, C.18, S.19, S.20, V.60, N.68 Ligands: NAG.1 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:V.60 Hydrogen bonds: C:H.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, X. et al., Structural insights into VRC01-class bnAb precursors with diverse light chains elicited in the IAVI G001 human vaccine trial. Biorxiv (2025)

Release Date

2025-06-25

Peptides

G001-58 Fab heavy chain: A
G001-58 Fab light chain: B
Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8-mingly: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
C

G001-58 Fab heavy chain

G001-58 Fab light chain

Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8-mingly

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