SMTL ID : 9oar.1 (1 other biounit)

Crystal structure of antibody Fab G001-179 from IAVI G001 human trial in complex with a germline-targeting gp120 engineered outer domain eOD-GT8-mingly

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: S.19, S.20, N.21, E.99 Ligands: NAG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.99 Water bridges: A:S.97 NAG.2: 9 residues within 4Å: Chain A: H.17, C.18, S.19, S.20, V.60, N.68, F.152, N.153 Ligands: NAG.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.60, A:F.152 Hydrogen bonds: A:H.17, A:S.20 Water bridges: A:S.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, X. et al., Structural insights into VRC01-class bnAb precursors with diverse light chains elicited in the IAVI G001 human vaccine trial. Biorxiv (2025)

Release Date

2025-06-25

Peptides

Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8-mingly: A
G001-179 Fab heavy chain: B
G001-179 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

C
L

Germline-targeting HIV-1 gp120 engineered outer domain eOD-GT8-mingly

G001-179 Fab heavy chain

G001-179 Fab light chain

Related Entries With Identical Sequence