SMTL ID : 9cpp.1

Crystal structure of SARS-CoV-2 receptor binding domain in complex with antibodies M22-17 and CC12.3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.19 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: G.7, N.11, V.35, L.36 No protein-ligand interaction detected (PLIP)

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: S.145, T.146 Chain B: Q.1, S.25, G.26, F.27 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.145, A:S.145, A:S.145, A:T.146, A:T.146, B:Q.1, B:G.26 CIT.3: 5 residues within 4Å: Chain A: G.153, Y.157 Chain B: F.99, D.105 Chain C: Y.49 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:Y.103, B:D.105, C:Y.49, C:Y.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feng, Z. et al., Structures of CR3022-like antibodies. To Be Published

Release Date

2025-06-25

Peptides

Spike protein S1: A
CC12.3 Fab heavy chain: B
CC12.3 Fab light chain: C
M22-17 Fab heavy chain: D
M22-17 Fab light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
G

D
H

E
L

Spike protein S1

CC12.3 Fab heavy chain

CC12.3 Fab light chain

M22-17 Fab heavy chain

M22-17 Fab light chain

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