SMTL ID : 9d4e.1 (1 other biounit)

Crystal structure of the human DCAF1 WDR domain in complex with OICR-41103

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 01: (4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-[(1E)-3-oxo-3-(piperidin-1-yl)prop-1-en-1-yl]-1H-pyrrole-3-carboxamide

01.1: 21 residues within 4Å: Chain A: T.22, T.64, H.65, T.80, Y.106, R.150, C.152, R.223, V.224, V.225, Y.234, G.235, A.236, L.238, K.252, P.254, F.255, I.279, F.280, D.281, L.282 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:T.22, A:T.80, A:R.223, A:R.223, A:V.225, A:L.238, A:P.254, A:P.254, A:F.255 Hydrogen bonds: A:R.223, A:D.281, A:D.281 Water bridges: A:C.24 pi-Stacking: A:F.255 Halogen bonds: A:R.150

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.2: 6 residues within 4Å: Chain A: R.277, E.295, Q.297, G.298, V.308, R.310 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.297 Hydrogen bonds: A:E.295, A:G.298 Salt bridges: A:R.277, A:R.277, A:R.310

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kimani, S. et al., Crystal structure of the human DCAF1 WDR domain in complex with OICR-1103. To be published

Release Date

2024-12-18

Peptides

DDB1- and CUL4-associated factor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DDB1- and CUL4-associated factor 1

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