SMTL ID : 9d5o.2 (3 other biounits)

Crystal structure of the second bromodomain of human BRD2 in complex with 3IND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x 01: methyl [(4S,6M,10aM)-6-(1H-indol-3-yl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]acetate

01.1: 11 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, C.85, Y.88, N.89, H.93, D.94, V.95 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.30, A:F.32, A:L.43, A:Y.88, A:H.93, A:D.94, A:V.95, A:V.95 Hydrogen bonds: A:N.89 Salt bridges: A:H.93

1 x PG0: 2-(2-METHOXYETHOXY)ETHANOL(Non-functional Binders)

PG0.2: 2 residues within 4Å: Chain A: K.101, V.105 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chowdhury, N. et al., Positional isomers of Indolyl-benzodiazepines display dissimilar binding and recruitment of BET transcriptional regulators to targeted genomic loci. Bioorg.Chem. (2025)

Release Date

2025-08-20

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bromodomain-containing protein 2

Related Entries With Identical Sequence