SMTL ID : 9d5o.3 (3 other biounits)

Crystal structure of the second bromodomain of human BRD2 in complex with 3IND

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

1 x 01: methyl [(4S,6M,10aM)-6-(1H-indol-3-yl)-8-methoxy-1-methyl-4H-[1,2,4]triazolo[4,3-a][1,4]benzodiazepin-4-yl]acetate

01.1: 9 residues within 4Å: Chain A: W.30, P.31, F.32, V.36, L.43, C.85, N.89, D.94, V.95 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.32, A:D.94, A:V.95 Hydrogen bonds: A:N.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chowdhury, N. et al., Positional isomers of Indolyl-benzodiazepines display dissimilar binding and recruitment of BET transcriptional regulators to targeted genomic loci. Bioorg.Chem. (2025)

Release Date

2025-08-20

Peptides

Bromodomain-containing protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Bromodomain-containing protein 2

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