SMTL ID : 9dom.4 (3 other biounits)

PVTX-405: A Potent, Highly Selective, and Orally Efficacious Molecular Glue Degrader of IKZF2 for Cancer Immunotherapy

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 01: (3S)-3-(1'-benzyl-6-oxo-6,8-dihydro-2H,7H-spiro[furo[2,3-e]isoindole-3,4'-piperidin]-7-yl)piperidine-2,6-dione

01.1: 16 residues within 4Å: Chain A: N.36, P.37, E.62, H.63, S.64, W.65, W.71, W.85, F.87 Chain B: P.5, H.7, C.8, N.9, Q.10, C.11, G.12 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.37, A:W.65, A:W.71, A:W.71, A:W.85, A:F.87 Hydrogen bonds: A:N.36, A:H.63, A:W.65 Salt bridges: A:E.62

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.8, C.11, C.76, C.79 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:C.76, A:C.79 ZN.3: 4 residues within 4Å: Chain B: C.8, C.11, H.24, H.28 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.8, B:C.11, B:H.24, B:H.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Development of PVTX-405 as a potent and highly selective molecular glue degrader of IKZF2 for cancer immunotherapy. Nat Commun (2025)

Release Date

2025-05-14

Peptides

Protein cereblon: A
Zinc finger protein Helios: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

Protein cereblon

Zinc finger protein Helios

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