SMTL ID : 9odr.3 (3 other biounits)

Structure of CRBN TBD bound to compound C1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

monomer

Ligands

1 x 01: (3S)-3-(6-oxo-6,8-dihydro-2H,7H-spiro[furo[2,3-e]isoindole-3,4'-piperidin]-7-yl)piperidine-2,6-dione

01.1: 10 residues within 4Å: Chain A: N.36, P.37, H.38, E.62, H.63, S.64, W.65, W.71, W.85, F.87 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.37, A:W.65, A:W.71, A:W.71, A:W.85, A:F.87 Hydrogen bonds: A:N.36, A:H.63, A:H.63, A:W.65 pi-Stacking: A:W.71

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.8, C.11, C.76, C.79 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:C.76, A:C.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, G. et al., Discovery and Characterization of PVTX-321 as a Potent and Orally Bioavailable Estrogen Receptor Degrader for ER+/HER2- Breast Cancer. J.Med.Chem. (2025)

Release Date

2025-05-28

Peptides

Protein cereblon: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Protein cereblon

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