SMTL ID : 9ods.4 (3 other biounits)

Structure of CRBN TBD bound to compound C3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

monomer

Ligands

1 x 01: (1P)-1-[(4S)-8H-spiro[furo[2,3-c]imidazo[1,2-a]pyridine-7,4'-piperidin]-3-yl]pyrimidine-2,4(1H,3H)-dione

01.1: 9 residues within 4Å: Chain A: N.36, P.37, E.62, H.63, S.64, W.65, W.71, W.85, F.87 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.37, A:W.65 Hydrogen bonds: A:E.62, A:H.63, A:H.63, A:W.65

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.8, C.11, C.76, C.79 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:C.76, A:C.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, G. et al., Discovery and Characterization of PVTX-321 as a Potent and Orally Bioavailable Estrogen Receptor Degrader for ER+/HER2- Breast Cancer. J.Med.Chem. (2025)

Release Date

2025-05-28

Peptides

Protein cereblon: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Protein cereblon

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