SMTL ID : 9dro.1

FphE, Staphylococcus aureus fluorophosphonate-binding serine hydrolases E, Oxadiazolone-peptide bound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-dimer

Ligands

2 x 01: methyl 2-formyl-2-phenylhydrazine-1-carboxylate

01.1: 15 residues within 4Å: Chain A: G.30, A.31, S.106, S.107, P.132 Chain B: M.163, F.166, L.170, I.172, M.180, W.200, I.205, T.209, H.260, L.261 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.31 Hydrogen bonds: A:A.31 Water bridges: A:S.107, B:W.200 pi-Stacking: B:W.200 01.4: 15 residues within 4Å: Chain A: M.163, F.166, L.170, I.172, M.180, W.200, I.205, T.209, P.238, H.260 Chain B: G.30, A.31, S.106, S.107, P.132 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:F.166, A:W.200, A:W.200, B:A.31 Hydrogen bonds: B:A.31 Water bridges: B:N.32, B:S.107, B:S.107

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: N.276 No protein-ligand interaction detected (PLIP) MG.3: 2 residues within 4Å: Chain A: D.139, W.143 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.139, H2O.2 MG.5: 3 residues within 4Å: Chain B: H.152, T.156, E.160 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.152, H2O.7, H2O.12 MG.6: 1 residues within 4Å: Chain B: D.149 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.149, H2O.8

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., An mRNA Display Approach for Covalent Targeting of a Staphylococcus aureus Virulence Factor. J.Am.Chem.Soc. (2025)

Release Date

2025-03-12

Peptides

Uncharacterized hydrolase SAUSA300_2518: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized hydrolase SAUSA300_2518

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